BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0335.0007.p (260 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BH2699 [V] COG1136 ABC-type antimicrobial peptide transport syst... 176 3e-44 BS_ytsC [V] COG1136 ABC-type antimicrobial peptide transport sys... 173 3e-43 lin1859 [V] COG1136 ABC-type antimicrobial peptide transport sys... 165 6e-41 BH0273 [V] COG1136 ABC-type antimicrobial peptide transport syst... 165 7e-41 SP0786 [V] COG1136 ABC-type antimicrobial peptide transport syst... 163 2e-40 >BH2699 [V] COG1136 ABC-type antimicrobial peptide transport system, ATPase component Length = 289 Score = 176 bits (446), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 14/226 (6%), Positives = 39/226 (17%), Gaps = 2/226 (0%) Query: 7 MVILEASGLHKVYDNGQSNPQPVLRNIKLQIQQGEFVAVMGPSGSGKSTLLYTVSGMDPI 66 M ++ G + L N+ + ++ + + Sbjct: 1 MDQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLS 60 Query: 67 TTGSVAFXXXXXXXXXXXXXXXIRLNEMGFIFQQMHLLKNLNIRDNILLPAYRAGQISRR 126 + F++ R + A+ R Sbjct: 61 KSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRP-PLR 119 Query: 127 SINKSAAELMRLTGISALAERNITQVSGGQMQRAAICRALINEPVMLFGDEPTGALNSQA 186 + E +T S Q + + + F Sbjct: 120 LGEFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPVLY 179 Query: 187 ATEIMGILAEI-NQSGTTILLATHDPRVAAKAERVLYMLDGNMASE 231 + ++ A + ++ Sbjct: 180 GLNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYV 225 >BS_ytsC [V] COG1136 ABC-type antimicrobial peptide transport system, ATPase component Length = 289 Score = 173 bits (438), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 10/226 (4%), Positives = 38/226 (16%), Gaps = 3/226 (1%) Query: 7 MVILEASGLHKVYDNGQSNPQPVLRNIKLQIQQGEFVAVMGPSGSGKSTLLYTVSGMDPI 66 M ++ QP+ + + + + Sbjct: 1 MDQAGIIRDLLIWLE-GHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRL 59 Query: 67 TTGSVAFXXXXXXXXXXXXXXXIRLNEMGFIFQQMHLLKNLNIRDNILLPAYRAGQISRR 126 + +VA + + + + G Sbjct: 60 SKSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEW-SAFGIRPPL 118 Query: 127 SINKSAAELMRLTGISALAERNITQVSGGQMQRAAICRALINEPVMLFGDEPTGALNSQA 186 + + + + +TQ +++ + R + + Sbjct: 119 RLGEFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPVL 178 Query: 187 ATEIMGILAEINQS-GTTILLATHDPRVAAKAERVLYMLDGNMASE 231 ++ A + + Sbjct: 179 YGLNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEY 224 >lin1859 [V] COG1136 ABC-type antimicrobial peptide transport system, ATPase component Length = 289 Score = 165 bits (418), Expect = 6e-41, Method: Compositional matrix adjust. Identities = 14/228 (6%), Positives = 38/228 (16%), Gaps = 3/228 (1%) Query: 9 ILEASGLHKVYDNGQSNPQPVLRNIKLQIQQGEFVAVMGPSGSGKSTLLYTVSGMDPITT 68 L G + L N+ + ++ + + + Sbjct: 4 AGIIRDLLIWL-EGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKS 62 Query: 69 GSVAFXXXXXXXXXXXXXXXIRLNEMGFIFQQMHLLKNLNIRDNILLPAYRAGQISRRSI 128 F++ R + A+ + R Sbjct: 63 AVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGI-RPPLRLG 121 Query: 129 NKSAAELMRLTGISALAERNITQVSGGQMQRAAICRALINEPVMLFGDEPTGALNSQAAT 188 + E +T S Q + + + F Sbjct: 122 EFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPVLYGL 181 Query: 189 EIMGILAEINQ-SGTTILLATHDPRVAAKAERVLYMLDGNMASEQWLG 235 + + A + ++ + Sbjct: 182 NETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTY 229 >BH0273 [V] COG1136 ABC-type antimicrobial peptide transport system, ATPase component Length = 289 Score = 165 bits (417), Expect = 7e-41, Method: Compositional matrix adjust. Identities = 14/231 (6%), Positives = 39/231 (16%), Gaps = 4/231 (1%) Query: 8 VILEASGLHKVYDNGQSNPQPVLRNIKLQIQQGEFVAVMGPSGSGKSTLLYTVSGMDPIT 67 + L + P L N+ + ++ + + Sbjct: 4 AGIIRDLLIWLE-GHLDQPL-SLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSK 61 Query: 68 TGSVAFXXXXXXXXXXXXXXXIRLNEMGFIFQQMHLLKNLNIRDNILLPAYRAGQISRRS 127 + F++ R + A + R Sbjct: 62 SAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSA-FGIRPPLRL 120 Query: 128 INKSAAELMRLTGISALAERNITQVSGGQMQRAAICRALINEPVMLFGDEPTGALNSQAA 187 + E +T S Q + + + F Sbjct: 121 GEFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPVLYG 180 Query: 188 TEIMGILAEINQS-GTTILLATHDPRVAAKAERVLYMLDGNMASEQWLGKY 237 + + A + ++ + + Sbjct: 181 LNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEG 231 >SP0786 [V] COG1136 ABC-type antimicrobial peptide transport system, ATPase component Length = 289 Score = 163 bits (413), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 14/223 (6%), Positives = 37/223 (16%), Gaps = 3/223 (1%) Query: 15 LHKVYDNGQSNPQPVLRNIKLQIQQGEFVAVMGPSGSGKSTLLYTVSGMDPITTGSVAFX 74 L + P L N+ + ++ + + + Sbjct: 10 LLIWLEGHLDQPL-SLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAVALRL 68 Query: 75 XXXXXXXXXXXXXXIRLNEMGFIFQQMHLLKNLNIRDNILLPAYRAGQISRRSINKSAAE 134 F++ R + A+ R + E Sbjct: 69 TARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIR-PPLRLGEFTMPE 127 Query: 135 LMRLTGISALAERNITQVSGGQMQRAAICRALINEPVMLFGDEPTGALNSQAATEIMGIL 194 +T S Q + + + F Sbjct: 128 HKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPVLYGLNETRPS 187 Query: 195 AEINQSGTTILLATHDPRVAAKAERVLYMLDGNMASEQ-WLGK 236 + + A + + + + Sbjct: 188 QDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYE 230 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.318 0.132 0.369 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 14,968,812 Number of extensions: 527540 Number of successful extensions: 17433 Number of sequences better than 1.0e-05: 1871 Number of HSP's gapped: 15372 Number of HSP's successfully gapped: 1995 Length of query: 260 Length of database: 38,378,431 Length adjustment: 104 Effective length of query: 156 Effective length of database: 26,383,695 Effective search space: 4115856420 Effective search space used: 4115856420 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 115 (48.9 bits)