BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0334.0006.p (596 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BH2727 [T] COG2972 Predicted signal transduction protein with a ... 166 7e-41 SP0662 [T] COG2972 Predicted signal transduction protein with a ... 164 4e-40 BH1909 [T] COG2972 Predicted signal transduction protein with a ... 160 8e-39 BS_yesM [T] COG2972 Predicted signal transduction protein with a... 154 5e-37 BH2110 [T] COG2972 Predicted signal transduction protein with a ... 142 2e-33 >BH2727 [T] COG2972 Predicted signal transduction protein with a C-terminal ATPase domain Length = 597 Score = 166 bits (421), Expect = 7e-41, Method: Compositional matrix adjust. Identities = 93/267 (34%), Positives = 146/267 (54%), Gaps = 7/267 (2%) Query: 325 RPVTRLTRQVNSIEEGHLDVQIIESDNYEIGILSKGIKDMMERIKHLLSQVEYEQEQKRI 384 + +T + Q++++ + H ++ S YE ++ DM+ ++ + V ++++R Sbjct: 326 KSLTNVVEQISNMAKYHFKRPLVASGGYETEQIANAFNDMLRELQEYVDLVVETEQKQRK 385 Query: 385 SEFAALQAQIHPHFLYNTLYSIKQLCELGETAEASRMISALSHYFRISISRGDELIPVET 444 +E ALQ QI+PHFLYNTL S+K + + G+ +A+ I AL + ++ +E I VE Sbjct: 386 AELKALQHQINPHFLYNTLTSVKFMVQQGDKEKAAETILALITLLQNALGHINETITVEQ 445 Query: 445 ELEHIRQYLTIQQMRYGDSIRYEMDVAPEMLSVPIVKLTLQPLVENAIYHGIKKVRRPGF 504 EL I++Y+ I Q RYG+ I+ V+PE L + KL LQP +ENA +H K ++ GF Sbjct: 446 ELTIIKKYVLINQARYGERIKVHYFVSPECLPYQMPKLVLQPFIENAFFHAFNK-KKEGF 504 Query: 505 IHISGRMEGELCRIRIEDNGFGMDQELPXXXXXXXLAAGEEPQEEPPVGFGVRNVHRRLQ 564 I + ++ E I DNG GMD E L++ + + G GVRNVH R+Q Sbjct: 505 IQVMAAVKDEKLLFEIVDNGDGMDLE------KVSLSSRYHGKRQLFHGIGVRNVHERIQ 558 Query: 565 LHYGSSFGLAYDSTEGQGTTVTVTFPL 591 L YG +G+ S G GT V V PL Sbjct: 559 LLYGKDYGVEMTSNIGNGTVVHVILPL 585 >SP0662 [T] COG2972 Predicted signal transduction protein with a C-terminal ATPase domain Length = 563 Score = 164 bits (415), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 93/265 (35%), Positives = 154/265 (58%), Gaps = 17/265 (6%) Query: 326 PVTRLTRQVNSIEEGHLDVQIIESDNYEIGILSKGIKDMMERIKHLLSQVEYEQEQKRIS 385 P+ L + I G +++ E YE+ +++ M+++I L+ + ++E R Sbjct: 305 PLKDLRETMLEIASGAQNLRAKEVGAYELREVTRQFNAMLDQIDQLMVAIRSQEETTRQY 364 Query: 386 EFAALQAQIHPHFLYNTLYSIKQLCELGETAEASRMISALSHYFRISISRGDELIPVETE 445 + AL +QI+PHFLYNTL +I + E ++ ++ +L+ YFR+++++G +LI + E Sbjct: 365 QLQALSSQINPHFLYNTLDTIIWMAEFHDSQRVVQVTKSLATYFRLALNQGKDLICLSDE 424 Query: 446 LEHIRQYLTIQQMRYGDSIRYEMD--VAPEMLSVPIVKLTLQPLVENAIYHGIKKVRRPG 503 + H+RQYL IQ+ RYGD + YE++ VA + L +P KL LQPLVENA+YHGIK+ G Sbjct: 425 INHVRQYLFIQKQRYGDKLEYEINENVAFDNLVLP--KLVLQPLVENALYHGIKEKEGQG 482 Query: 504 FIHISGRMEGELCRIRIEDNGFGMDQELPXXXXXXXLAAGEEPQEEPPV-GFGVRNVHRR 562 I +S + + IRIED+G G AG+ Q + G G++NV +R Sbjct: 483 HIKLSVQKQDSGLVIRIEDDGVGFQD------------AGDSSQSQLKRGGVGLQNVDQR 530 Query: 563 LQLHYGSSFGLAYDSTEGQGTTVTV 587 L+LH+G+++ + DS +GT V + Sbjct: 531 LKLHFGANYHMKIDSRPQKGTKVEI 555 >BH1909 [T] COG2972 Predicted signal transduction protein with a C-terminal ATPase domain Length = 597 Score = 160 bits (404), Expect = 8e-39, Method: Compositional matrix adjust. Identities = 93/272 (34%), Positives = 142/272 (52%), Gaps = 11/272 (4%) Query: 325 RPVTRLTRQVNSIEEGHLDVQIIESDNYEIGILSKGIKDMMERIKHLLSQVEYEQEQKRI 384 + ++ L+ ++N + G L +I+ EIG LS M+ ++ L+ QV QKR+ Sbjct: 321 KRLSHLSERINQVASGDLKTKIVVDGKDEIGQLSVQFNQMVANLRSLIHQVHETNRQKRL 380 Query: 385 SE-------FAALQAQIHPHFLYNTLYSIKQLCELGETAEASRMISALSHYFRISISRGD 437 E L +QI+PHFL+NTL SI+ + E ++++ L R S+ Sbjct: 381 LEKSQNEIKLKMLASQINPHFLFNTLESIRMKSHMKGETEIAKVVKQLGKLMRKSLEVTG 440 Query: 438 ELIPVETELEHIRQYLTIQQMRYGDSIRYEMDVAPEMLSVPIVKLTLQPLVENAIYHGIK 497 IP+ EL+ +R YL IQ RYGD + YE+ + P+ V I+ L +QPLVENA+ HG++ Sbjct: 441 HHIPLRNELDMVRCYLEIQTFRYGDRLHYELYIDPQSEMVEILPLIIQPLVENAVIHGLE 500 Query: 498 KVRRPGFIHISGRMEGELCRIRIEDNGFGMDQELPXXXXXXXLAAGEEPQEEPPVGFGVR 557 + G + IS + G + + D+G GMD+E PQE G+ Sbjct: 501 RTEDGGTVTISTIVNGNDLTVIVNDDGCGMDEEKLEAIQNML----HHPQEVDGNKIGLL 556 Query: 558 NVHRRLQLHYGSSFGLAYDSTEGQGTTVTVTF 589 NVH+RLQL YG + GL +S +G+GT V T Sbjct: 557 NVHKRLQLTYGKTSGLIIESAKGKGTCVRFTI 588 >BS_yesM [T] COG2972 Predicted signal transduction protein with a C-terminal ATPase domain Length = 577 Score = 154 bits (388), Expect = 5e-37, Method: Compositional matrix adjust. Identities = 96/339 (28%), Positives = 165/339 (48%), Gaps = 20/339 (5%) Query: 258 EMTSRTGMRIVVLYETIAINNWRLAVVYPQAEIYEKVNYIKYXXXXXXXXXXXXXXXXXX 317 ++ + G R + Y + NW V P +++ K++++K Sbjct: 249 DLIKKNGKRYFISYLQSSYQNWSYYNVIPFDQMFAKISFMKTVIGTCFLLFFCVVLLFGR 308 Query: 318 XXXXXXXRPVTRLTRQVNSIE----EGHLDVQIIESDNYEIGILSKGIKDMMERIKHLLS 373 P+ +L + S++ E + + + E E G+L++ MM+RI L+ Sbjct: 309 KIANSITEPIEQLVTAMKSVQHSGIEAGVSLSLPEHTQDEAGMLNRHFTVMMKRINELME 368 Query: 374 QVEYEQEQKRISEFAALQAQIHPHFLYNTLYSIKQLCELGETAEASRMISALSHYFRISI 433 + +Q + +E ALQAQI+PHFLYNTL SI L + + + S+M+ +L R SI Sbjct: 369 ENVEKQLIIKETELKALQAQINPHFLYNTLESINWLAKANQQKQISKMVESLGFLLRNSI 428 Query: 434 SRGDELIPVETELEHIRQYLTIQQMRYGDSIRYEMDVAPEMLSVPIVKLTLQPLVENAIY 493 +++ ++ E + +R Y+TIQ+ R+ + +++ +D+ E+ I KLTLQPL ENAI Sbjct: 429 HMKKDIVTIQEEADIVRHYMTIQRFRFEERLKFTLDIDDEVKHCLIPKLTLQPLAENAIQ 488 Query: 494 HGIKKVRRPGFIHISG-RMEGELCRIRIEDNGFGMDQELPXXXXXXXLAAGEEPQEEPPV 552 + ++ RP I I + +G +C I +EDNG GMD G + Sbjct: 489 YALEPFTRPCAIRIQAKKAKGCVC-ITVEDNGPGMD--------------GRILESTGGR 533 Query: 553 GFGVRNVHRRLQLHYGSSFGLAYDSTEGQGTTVTVTFPL 591 G G+ N+ R+ L +G +GL S +GT + +T P Sbjct: 534 GIGLWNIRERISLTFGEPYGLRIHSEHEKGTRIVITIPC 572 >BH2110 [T] COG2972 Predicted signal transduction protein with a C-terminal ATPase domain Length = 585 Score = 142 bits (358), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 86/270 (31%), Positives = 142/270 (52%), Gaps = 14/270 (5%) Query: 329 RLTRQVNSIEEGHLDVQIIESDNYEIGILSKGIKDMMERIKHLLSQVEYE-------QEQ 381 R+ + + +++ D+ D EIG L+ M + I L+++V Q + Sbjct: 314 RVLKHMKRMKKQKFDIINFPGDKDEIGELTNEFNKMSQTINRLINEVYASNIEKKDLQLR 373 Query: 382 KRISEFAALQAQIHPHFLYNTLYSIKQLCELGETAEASRMISALSHYFRISISRGDELIP 441 ++ ++ +ALQ+QI+PHFL+N L +I+ + E +++I ++ FR S++ G + + Sbjct: 374 EKQAQLSALQSQINPHFLFNALETIRMRSMIKGEKETAKIIQNMAKIFRNSLTWGKDWVT 433 Query: 442 VETELEHIRQYLTIQQMRYGDSIRYEMDVAPEMLSVPIVKLTLQPLVENAIYHGIKKVRR 501 V EL I +L IQ+ R+GD + YE+D+ E I + P VENA HGI+ V+ Sbjct: 434 VRDELCLIICFLEIQKYRFGDKMEYELDIDEEAYDYIIPNMVFLPFVENASIHGIESVKE 493 Query: 502 PGFIHIS-GRMEGELCRIRIEDNGFGMDQELPXXXXXXXLAAGEEPQEEPPVGFGVRNVH 560 G I I + +GE+ I DNG GMD+E L + +E G++NV+ Sbjct: 494 KGIIQIRVEKNDGEIV-YEISDNGAGMDEE-----KLASLIETLKNEENMGENVGIKNVY 547 Query: 561 RRLQLHYGSSFGLAYDSTEGQGTTVTVTFP 590 RL+LHY + F + +S GQGTTV + P Sbjct: 548 YRLKLHYKNHFDFSINSRPGQGTTVQIKLP 577 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.319 0.135 0.386 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 39,865,936 Number of extensions: 1515715 Number of successful extensions: 3861 Number of sequences better than 1.0e-05: 26 Number of HSP's gapped: 3813 Number of HSP's successfully gapped: 26 Length of query: 596 Length of database: 38,378,431 Length adjustment: 112 Effective length of query: 484 Effective length of database: 25,461,023 Effective search space: 12323135132 Effective search space used: 12323135132 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 119 (50.4 bits)