BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0333.0014.p (278 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value PA3112 [I] COG0777 Acetyl-CoA carboxylase beta subunit 277 1e-74 AGc323 [E] COG0665 Glycine/D-amino acid oxidases (deaminating) 239 5e-63 AGc3252 [E] COG0347 Nitrogen regulatory protein PII 239 5e-63 AGc3216 [R] COG0517 FOG: CBS domain 239 5e-63 AGc3294 [R] COG1079 Uncharacterized ABC-type transport system, p... 239 5e-63 >PA3112 [I] COG0777 Acetyl-CoA carboxylase beta subunit Length = 290 Score = 277 bits (709), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 136/265 (51%), Positives = 175/265 (66%), Gaps = 3/265 (1%) Query: 8 VEGERPKREIPEGLMSKCTKCGTIQYSKELEKNLKVCPSCGYHMRLNASERIAMTLDPEG 67 + E K +PEGL KC C + Y ELEK L VCP C +HMR+NA R+ + LD +G Sbjct: 14 MRSESQKSSVPEGLWHKCPSCEAVLYRPELEKTLDVCPKCDHHMRINARTRLDIFLDEDG 73 Query: 68 FIEFDSEMASVDPLQF---PGYASKLEQQQSKTGQVEAVITGQGTIGGHPVIVAVMNFEF 124 E +++ VD L+F Y +L Q TG+ +A+I G + G PV+ F F Sbjct: 74 REELGADLEPVDRLKFRDSKKYKDRLAAAQKDTGEKDALIAMSGKLQGMPVVACAFEFSF 133 Query: 125 FTGSMGSVVGEKITRAVEEATEKRLPLLIFSTSGGARMQESILSLMQMAKTSAALARFGE 184 GSMG++VGE+ RA A EKR PL+ FS SGGARMQE+++SLMQMAKTSA LAR E Sbjct: 134 MGGSMGAIVGERFVRAANVALEKRCPLICFSASGGARMQEALISLMQMAKTSAVLARLRE 193 Query: 185 AGGLYISVITDPTTGGVSASFASLGDIIIAEPGAVFGFAGRIVIEQTIRQKLPEDFQTAE 244 G ++SV+TDP GGVSAS A LGD+I+ EP A+ GFAG VIEQT+R+KLPE FQ +E Sbjct: 194 EGIPFVSVLTDPVYGGVSASLAMLGDVIVGEPKALIGFAGPRVIEQTVREKLPEGFQRSE 253 Query: 245 FNLQHGQLDLVVHRKEMRATLAKLL 269 F L+HG +D++VHR E+R LA LL Sbjct: 254 FLLEHGAIDMIVHRAELRPRLANLL 278 >AGc323 [E] COG0665 Glycine/D-amino acid oxidases (deaminating) Length = 289 Score = 239 bits (609), Expect = 5e-63, Method: Compositional matrix adjust. Identities = 15/265 (5%), Positives = 42/265 (15%), Gaps = 5/265 (1%) Query: 10 GERPKREIPEGLMSKCTKCGTIQYSKELEKNLKVCPSCGYHMRLNASERIAMTLDPEGFI 69 I ++ + + + G Sbjct: 17 VVGY--PIKHSRSPIIHSYWLKKFGIAGSYTAVEVSPDDFPKFIATLKEGKPGAAVGGNA 74 Query: 70 EFDSEMASVDPLQF---PGYASKLEQQQSKTGQVEAVITGQGTIGGHPVIVAVMNFEFFT 126 + A+ G + ++ Sbjct: 75 TIPHKEAAYRLADHPDALAEELGAANTIWMEEGKLHATNTDGYGFVSNLDERHPGWDKTQ 134 Query: 127 GSMGSVVGEKITRAVEEATEKRLPLLIFSTSGGARMQESILSLMQMAKTSAALARFGEAG 186 ++ G ++ ++ + + R +E + A Sbjct: 135 RAVVFGAGGASRAVIQSLRDRDVAEIHVVNRTVERARELADRFGPRVFSHPQAALQEVMH 194 Query: 187 GLYISVITDPTTGGVSASFASLGDIIIAEPGAVFGFAGRIVIEQTIRQKLPEDFQTAEFN 246 G + V T + + + A + + Sbjct: 195 GAGLFVNTTSLGMNGTEAPHLDFSHLAANAVVTDIVYVPLKTPILNMAQEQGIATVDGLG 254 Query: 247 LQHGQLDLVVHRKEMRATLAKLLDL 271 + Q R R Sbjct: 255 MLLHQAKPGFRRWFGRIPEVDETLR 279 >AGc3252 [E] COG0347 Nitrogen regulatory protein PII Length = 289 Score = 239 bits (609), Expect = 5e-63, Method: Compositional matrix adjust. Identities = 15/265 (5%), Positives = 42/265 (15%), Gaps = 5/265 (1%) Query: 10 GERPKREIPEGLMSKCTKCGTIQYSKELEKNLKVCPSCGYHMRLNASERIAMTLDPEGFI 69 I ++ + + + G Sbjct: 17 VVGY--PIKHSRSPIIHSYWLKKFGIAGSYTAVEVSPDDFPKFIATLKEGKPGAAVGGNA 74 Query: 70 EFDSEMASVDPLQF---PGYASKLEQQQSKTGQVEAVITGQGTIGGHPVIVAVMNFEFFT 126 + A+ G + ++ Sbjct: 75 TIPHKEAAYRLADHPDALAEELGAANTIWMEEGKLHATNTDGYGFVSNLDERHPGWDKTQ 134 Query: 127 GSMGSVVGEKITRAVEEATEKRLPLLIFSTSGGARMQESILSLMQMAKTSAALARFGEAG 186 ++ G ++ ++ + + R +E + A Sbjct: 135 RAVVFGAGGASRAVIQSLRDRDVAEIHVVNRTVERARELADRFGPRVFSHPQAALQEVMH 194 Query: 187 GLYISVITDPTTGGVSASFASLGDIIIAEPGAVFGFAGRIVIEQTIRQKLPEDFQTAEFN 246 G + V T + + + A + + Sbjct: 195 GAGLFVNTTSLGMNGTEAPHLDFSHLAANAVVTDIVYVPLKTPILNMAQEQGIATVDGLG 254 Query: 247 LQHGQLDLVVHRKEMRATLAKLLDL 271 + Q R R Sbjct: 255 MLLHQAKPGFRRWFGRIPEVDETLR 279 >AGc3216 [R] COG0517 FOG: CBS domain Length = 289 Score = 239 bits (609), Expect = 5e-63, Method: Compositional matrix adjust. Identities = 15/265 (5%), Positives = 42/265 (15%), Gaps = 5/265 (1%) Query: 10 GERPKREIPEGLMSKCTKCGTIQYSKELEKNLKVCPSCGYHMRLNASERIAMTLDPEGFI 69 I ++ + + + G Sbjct: 17 VVGY--PIKHSRSPIIHSYWLKKFGIAGSYTAVEVSPDDFPKFIATLKEGKPGAAVGGNA 74 Query: 70 EFDSEMASVDPLQF---PGYASKLEQQQSKTGQVEAVITGQGTIGGHPVIVAVMNFEFFT 126 + A+ G + ++ Sbjct: 75 TIPHKEAAYRLADHPDALAEELGAANTIWMEEGKLHATNTDGYGFVSNLDERHPGWDKTQ 134 Query: 127 GSMGSVVGEKITRAVEEATEKRLPLLIFSTSGGARMQESILSLMQMAKTSAALARFGEAG 186 ++ G ++ ++ + + R +E + A Sbjct: 135 RAVVFGAGGASRAVIQSLRDRDVAEIHVVNRTVERARELADRFGPRVFSHPQAALQEVMH 194 Query: 187 GLYISVITDPTTGGVSASFASLGDIIIAEPGAVFGFAGRIVIEQTIRQKLPEDFQTAEFN 246 G + V T + + + A + + Sbjct: 195 GAGLFVNTTSLGMNGTEAPHLDFSHLAANAVVTDIVYVPLKTPILNMAQEQGIATVDGLG 254 Query: 247 LQHGQLDLVVHRKEMRATLAKLLDL 271 + Q R R Sbjct: 255 MLLHQAKPGFRRWFGRIPEVDETLR 279 >AGc3294 [R] COG1079 Uncharacterized ABC-type transport system, permease component Length = 289 Score = 239 bits (609), Expect = 5e-63, Method: Compositional matrix adjust. Identities = 15/265 (5%), Positives = 42/265 (15%), Gaps = 5/265 (1%) Query: 10 GERPKREIPEGLMSKCTKCGTIQYSKELEKNLKVCPSCGYHMRLNASERIAMTLDPEGFI 69 I ++ + + + G Sbjct: 17 VVGY--PIKHSRSPIIHSYWLKKFGIAGSYTAVEVSPDDFPKFIATLKEGKPGAAVGGNA 74 Query: 70 EFDSEMASVDPLQF---PGYASKLEQQQSKTGQVEAVITGQGTIGGHPVIVAVMNFEFFT 126 + A+ G + ++ Sbjct: 75 TIPHKEAAYRLADHPDALAEELGAANTIWMEEGKLHATNTDGYGFVSNLDERHPGWDKTQ 134 Query: 127 GSMGSVVGEKITRAVEEATEKRLPLLIFSTSGGARMQESILSLMQMAKTSAALARFGEAG 186 ++ G ++ ++ + + R +E + A Sbjct: 135 RAVVFGAGGASRAVIQSLRDRDVAEIHVVNRTVERARELADRFGPRVFSHPQAALQEVMH 194 Query: 187 GLYISVITDPTTGGVSASFASLGDIIIAEPGAVFGFAGRIVIEQTIRQKLPEDFQTAEFN 246 G + V T + + + A + + Sbjct: 195 GAGLFVNTTSLGMNGTEAPHLDFSHLAANAVVTDIVYVPLKTPILNMAQEQGIATVDGLG 254 Query: 247 LQHGQLDLVVHRKEMRATLAKLLDL 271 + Q R R Sbjct: 255 MLLHQAKPGFRRWFGRIPEVDETLR 279 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.318 0.135 0.381 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 20,170,760 Number of extensions: 781436 Number of successful extensions: 2375 Number of sequences better than 1.0e-05: 48 Number of HSP's gapped: 2333 Number of HSP's successfully gapped: 48 Length of query: 278 Length of database: 38,378,431 Length adjustment: 105 Effective length of query: 173 Effective length of database: 26,268,361 Effective search space: 4544426453 Effective search space used: 4544426453 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 115 (48.9 bits)