BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0333.0013.p (325 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value NMB1177 [I] COG0825 Acetyl-CoA carboxylase alpha subunit 306 4e-83 NMB1139 [I] COG0825 Acetyl-CoA carboxylase alpha subunit 306 4e-83 STM0716 [L] COG0582 Integrase 58 2e-08 DR1316 [I] COG4799 Acetyl-CoA carboxylase, carboxyltransferase c... 53 6e-07 VNG1529G [I] COG4799 Acetyl-CoA carboxylase, carboxyltransferase... 52 1e-06 >NMB1177 [I] COG0825 Acetyl-CoA carboxylase alpha subunit Length = 319 Score = 306 bits (783), Expect = 4e-83, Method: Compositional matrix adjust. Identities = 155/306 (50%), Positives = 205/306 (66%) Query: 2 PLLEMRKKIAELKQFGEEKGIDFSDETARLEERYRVMEDEIYSNISPSQKMHLARHHGRP 61 P+ E+ KI EL+ +E +D SDE RL+++ + I+S ++P+Q ++RH RP Sbjct: 11 PIAELTNKIDELRFVQDESAVDISDEIHRLQKKSNDLTKSIFSKLTPAQISQVSRHPQRP 70 Query: 62 TSLDLISLMFTDFIELHGDRHFGDDLAVVGGIAKLNGAPVTVIGQQRGKDTKENILRFFG 121 +LD I +FTDF ELHGDRHF DD A+VGG+A+ NG V V+G Q+G+DTKE I R FG Sbjct: 71 YTLDYIEALFTDFEELHGDRHFADDYAIVGGLARFNGQSVMVVGHQKGRDTKEKIRRNFG 130 Query: 122 SAHPEGFRKALRLMKQAEKFGRPIVTFVDTKGAYPGNTAEERGQSEAIARNLYEMSQLAV 181 PEG+RKALRLMK AEKFG P++TF+DT GAYPG AEERGQSEAI +NLYE+++L V Sbjct: 131 MPRPEGYRKALRLMKTAEKFGLPVMTFIDTPGAYPGIGAEERGQSEAIGKNLYELTRLRV 190 Query: 182 PVVCVIIGEGGSGGALAMAVGNRVLMLEHAIYSAISPNGAASILWKDASKAEQAAEAMKI 241 PV+C +IGEGGSGGALA+A+G+ V ML+++ YS ISP G ASILWK A KA AA+A+ I Sbjct: 191 PVLCTVIGEGGSGGALAVALGDYVNMLQYSTYSVISPEGCASILWKTAEKAADAAQALGI 250 Query: 242 TAADXXXXXXXXXXXXXXRGGAHRDYEETAAAIKDAVWRHLQELSGLDSAELKEDRYRKF 301 TA GGAHRD+ +T +K + + L E + A+L R+ + Sbjct: 251 TADRLQKLDLVDTVIKEPLGGAHRDFGQTMKNVKAVLEKQLHEAQSIPLADLLSRRFDRI 310 Query: 302 RKIGVF 307 G F Sbjct: 311 MAYGKF 316 >NMB1139 [I] COG0825 Acetyl-CoA carboxylase alpha subunit Length = 319 Score = 306 bits (783), Expect = 4e-83, Method: Compositional matrix adjust. Identities = 155/306 (50%), Positives = 205/306 (66%) Query: 2 PLLEMRKKIAELKQFGEEKGIDFSDETARLEERYRVMEDEIYSNISPSQKMHLARHHGRP 61 P+ E+ KI EL+ +E +D SDE RL+++ + I+S ++P+Q ++RH RP Sbjct: 11 PIAELTNKIDELRFVQDESAVDISDEIHRLQKKSNDLTKSIFSKLTPAQISQVSRHPQRP 70 Query: 62 TSLDLISLMFTDFIELHGDRHFGDDLAVVGGIAKLNGAPVTVIGQQRGKDTKENILRFFG 121 +LD I +FTDF ELHGDRHF DD A+VGG+A+ NG V V+G Q+G+DTKE I R FG Sbjct: 71 YTLDYIEALFTDFEELHGDRHFADDYAIVGGLARFNGQSVMVVGHQKGRDTKEKIRRNFG 130 Query: 122 SAHPEGFRKALRLMKQAEKFGRPIVTFVDTKGAYPGNTAEERGQSEAIARNLYEMSQLAV 181 PEG+RKALRLMK AEKFG P++TF+DT GAYPG AEERGQSEAI +NLYE+++L V Sbjct: 131 MPRPEGYRKALRLMKTAEKFGLPVMTFIDTPGAYPGIGAEERGQSEAIGKNLYELTRLRV 190 Query: 182 PVVCVIIGEGGSGGALAMAVGNRVLMLEHAIYSAISPNGAASILWKDASKAEQAAEAMKI 241 PV+C +IGEGGSGGALA+A+G+ V ML+++ YS ISP G ASILWK A KA AA+A+ I Sbjct: 191 PVLCTVIGEGGSGGALAVALGDYVNMLQYSTYSVISPEGCASILWKTAEKAADAAQALGI 250 Query: 242 TAADXXXXXXXXXXXXXXRGGAHRDYEETAAAIKDAVWRHLQELSGLDSAELKEDRYRKF 301 TA GGAHRD+ +T +K + + L E + A+L R+ + Sbjct: 251 TADRLQKLDLVDTVIKEPLGGAHRDFGQTMKNVKAVLEKQLHEAQSIPLADLLSRRFDRI 310 Query: 302 RKIGVF 307 G F Sbjct: 311 MAYGKF 316 >STM0716 [L] COG0582 Integrase Length = 188 Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 0/153 (0%), Positives = 0/153 (0%), Gaps = 12/153 (7%) Query: 89 VVGGIAKLNGAPVTVIGQQRGKDTKENILRFFGSAHPEGFRKALRLMKQAEKFGRPIVTF 148 Sbjct: 308 -------- 359 Query: 149 VDTKGAYPGNTAEERGQSEAIARNLYEMSQLAVPVVCVIIGEGGSGGALAMAV----GNR 204 Sbjct: 360 419 Query: 205 VLMLEHAIYSAISPNGAASILWKDASKAEQAAE 237 Sbjct: 420 452 >DR1316 [I] COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) Length = 520 Score = 53.1 bits (126), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 54/199 (27%), Positives = 88/199 (44%), Gaps = 28/199 (14%) Query: 46 ISPSQKMHLARHHGRPTSL-DLISLMFTD--FIELHGDRHFGDDLAVVGGIAKLNGAPVT 102 ++P Q+ RP ++ D+I + D F+E+ D + ++ V G A+LNG V Sbjct: 279 VTPDQR--------RPYAMQDVIRELVDDGTFLEIQPD--WAKNIIV--GFARLNGQSVG 326 Query: 103 VIGQQRGKDTKENILRFFGSAHPEGFRKALRLMKQAEKFGRPIVTFVDTKGAYPGNTAEE 162 ++ N GS + + KA R ++ + + PI+T VD G PG E Sbjct: 327 IVAN--------NPKALSGSLNIDASDKAARFIRTCDCYNVPILTLVDVSGFLPGVQQEY 378 Query: 163 RGQSEAIARNLYEMSQLAVPVVCVIIGEGGSGGALAMAV----GNRVLMLEHAIYSAISP 218 G A+ LY ++ VP V +I + G LAM + V A + + Sbjct: 379 GGIIRHGAKMLYAYAEATVPKVTLITRKSYGGAYLAMNSRDMGADVVYAWPTATVAVMGA 438 Query: 219 NGAASILW-KDASKAEQAA 236 GAA+I++ KD +E A Sbjct: 439 EGAANIVYRKDIKDSENPA 457 >VNG1529G [I] COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) Length = 516 Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 40/148 (27%), Positives = 67/148 (45%), Gaps = 12/148 (8%) Query: 89 VVGGIAKLNGAPVTVIGQQRGKDTKENILRFFGSAHPEGFRKALRLMKQAEKFGRPIVTF 148 +V G A+L+G V ++ Q + G+ + K R ++ + F PI+T Sbjct: 309 IVVGFARLDGRSVGIVANQPRVNA--------GTLDIDASEKGSRFVRFCDSFNVPILTL 360 Query: 149 VDTKGAYPGNTAEERGQSEAIARNLYEMSQLAVPVVCVIIGEGGSGGALAMAVGNRVLML 208 VD G PG E G A+ LY S+ +VP++ VI + G MA + + Sbjct: 361 VDVPGFLPGTDQEHGGIIRHGAKLLYAFSEASVPLMTVITRKAYGGAYDVMASKHIGADV 420 Query: 209 EHAIYSA----ISPNGAASILWKDASKA 232 +A +A + P GA ++L+ D +A Sbjct: 421 NYAWPTAEIAVMGPKGAVNVLYSDELEA 448 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.318 0.135 0.384 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 22,313,297 Number of extensions: 962107 Number of successful extensions: 9063 Number of sequences better than 1.0e-05: 16 Number of HSP's gapped: 9069 Number of HSP's successfully gapped: 16 Length of query: 325 Length of database: 38,378,431 Length adjustment: 107 Effective length of query: 218 Effective length of database: 26,037,693 Effective search space: 5676217074 Effective search space used: 5676217074 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 116 (49.3 bits)