BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0327.0008.p (579 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BS_yhxB [G] COG1109 Phosphomannomutase 590 e-168 CAC2337 [G] COG1109 Phosphomannomutase 576 e-164 BH1106 [G] COG1109 Phosphomannomutase 575 e-164 lin2618 [G] COG1109 Phosphomannomutase 516 e-146 SPy1224 [G] COG1109 Phosphomannomutase 504 e-142 >BS_yhxB [G] COG1109 Phosphomannomutase Length = 346 Score = 590 bits (1521), Expect = e-168, Method: Compositional matrix adjust. Identities = 0/568 (0%), Positives = 0/568 (0%), Gaps = 30/568 (5%) Query: 21 RWLQDPSVDENTKAELNLLANEPQELEERFYRDLEFGTGGLRGVIGAGSNRINRYTVGRA 80 L+ ++ T + + + + + + Sbjct: 9 SSLEVSTLGLGTMTFGEQNSEADAHAQLDYAVAQGINLIDVAEMYPVPPRPETQGLTETY 68 Query: 81 TQGFANYILEQHTGEGRPSVVIAHDSRRFSPEFTLEAALVLAGNGIEAHLFPSLRSTPQL 140 + + V + + L L Sbjct: 69 VGNWLAKHGSREKLIIASKVSGPSRNNDKGIRPDQALDRKNIREALHDSLKRLQTDYLDL 128 Query: 141 SFTVRHLKATGGVVITASHNPPEYNGYKVYNAEGGQLVPHEAEKVISYILEVDSFNGVKR 200 + T + + A K+ + ++ GV R Sbjct: 129 YQVHWPQRPTNCFGKLGYSWTDSAPAVSLLDTLDALAEYQRAGKIRYIGVSNETAFGVMR 188 Query: 201 MSQEEAEAGGLLHWLGEQEDEAFTDTVAAVSVARDEITSTLGRDFKIVYTPLHGTGNLPV 260 D V++ ++ + V Sbjct: 189 Y----------------LHLADKHDLPRIVTI-QNPYSLLN--RSFEVGLAEVSQYEGVE 229 Query: 261 RSVLSKIGFTQVHVVPEQELPDSEFSTVKSPNPEEREAFTLAIKLGEELGADLLIGTDPD 320 S +GF + + + + G DP Sbjct: 230 LLAYSCLGFGTLTGKYLNGAKPAGARNTLFSRFTRYSGEQTQKAVAAYVDIARRHGLDPA 289 Query: 321 ADRMGAVVRDNEGKFVVLSGNQSGALMIHYYLSRLQEQGKLPSNGAVVKTIVTSEMGAAV 380 Sbjct: 290 349 Query: 381 AEHYGATVFNTLTGFKYIGEKMTQFQQSGEYTYLFGYEESYGYLAGNYARDKDAVLASML 440 Sbjct: 350 409 Query: 441 IAEAGAYYKAQGKTLYDVLQELYEQFGYFLESLESRTLKGKDGVAQIQGIMNDWRSNPPQ 500 Sbjct: 410 469 Query: 501 EIAGAAVSEVLDYSLGLN-----------GLPKENVLKYLLSDGSWFCLRPSGTEPKIKV 549 Sbjct: 470 529 Query: 550 YFAVRGESLQNAKDKVATLTQQVMSRVD 577 Sbjct: 530 557 >CAC2337 [G] COG1109 Phosphomannomutase Length = 346 Score = 576 bits (1484), Expect = e-164, Method: Compositional matrix adjust. Identities = 0/572 (0%), Positives = 0/572 (0%), Gaps = 16/572 (2%) Query: 17 ETLSRWLQDPSVDENTKAELNLLANEPQELEERFYRDLEFGTGGLRGVIGAGSNRINRYT 76 L+ ++ T + + Y + + R Sbjct: 5 RIPHSSLEVSTLGLGTMTFGEQNSEA-DAHAQLDYAVAQGINLIDVAEMYPVPPRPETQG 63 Query: 77 VGRATQGFANYILEQHTGEGRPSVVIAHDSRRFSPEFTLEAALVLAGNGIEAHLFPSLRS 136 + G + + + + L I L SL+ Sbjct: 64 LTETYVGNWLAKHGSREK---LIIASKVSGPSRNNDKGIRPDQALDRKNIREALHDSLKR 120 Query: 137 TPQLSFTVRHLKATGGVVITASHNPPEYNGYKVYNAEGGQLVPHEAEKVISYILEVDSFN 196 + + + + L + I + N Sbjct: 121 LQTDYLDLYQVHWPQRPTNCFGKLGYSWTDSAPAVSLLDTLDALAEYQRAGKIRYIGVSN 180 Query: 197 GVKRMSQEEAEAGGLLHWLGEQEDEAFTDTVAAVSVARDEITSTLGRDFKIVYTPLHGTG 256 + + S +++ G G Sbjct: 181 ETAFGVMRYLHLADKHDLPRIVTIQNPYSLLNRSFEVGLAEVSQ-YEGVELLAYSCLGFG 239 Query: 257 NLPVRSVLSKIGFTQVHVVPEQELPDSEFSTVKSPNPEEREAFTLAIKLGEELGADLLIG 316 L + + + + + S T K+ A + + A + Sbjct: 240 TLTGKYLNGAKPAGARNTLFSRFTRYSGEQTQKAVAAYVDIARRHGLDPAQMALAFVRRQ 299 Query: 317 TDPDADRMGAVVRDNEGKFVVLSGNQSGALMIHYYLSRLQEQGKLPSNGAVVKTIVTSEM 376 Sbjct: 300 359 Query: 377 GAAVAEHYGATVFNTLTGFKYIGEKMTQFQQSGEYTYLFGYEESYGYLAGNYARDKDAVL 436 Sbjct: 360 419 Query: 437 ASMLIAEAGAYYKAQGKTLYDVLQELYEQFGYFLESLESRTLKGKDGVAQIQGIMNDWRS 496 Sbjct: 420 479 Query: 497 NPPQEIAGAAVSEVLDYSLGLNG-----------LPKENVLKYLLSDGSWFCLRPSGTEP 545 Sbjct: 480 539 Query: 546 KIKVYFAVRGESLQNAKDKVATLTQQVMSRVD 577 Sbjct: 540 571 >BH1106 [G] COG1109 Phosphomannomutase Length = 346 Score = 575 bits (1483), Expect = e-164, Method: Compositional matrix adjust. Identities = 0/563 (0%), Positives = 0/563 (0%), Gaps = 12/563 (2%) Query: 21 RWLQDPSVDENTKAELNLLANEPQELEERFYRDLEFGTGGLRGVIGAGSNRINRYTVGRA 80 L+ ++ T + + + + + + Sbjct: 9 SSLEVSTLGLGTMTFGEQNSEADAHAQLDYAVAQGINLIDVAEMYPVPPRPETQGLTETY 68 Query: 81 TQGFANYILEQHTGEGRPSVVIAHDSRRFSPEFTLEAALVLAGNGIEAHLFPSLRSTPQL 140 + + V + + L L Sbjct: 69 VGNWLAKHGSREKLIIASKVSGPSRNNDKGIRPDQALDRKNIREALHDSLKRLQTDYLDL 128 Query: 141 SFTVRHLKATGGVVITASHNPPEYNGYKVYNAEGGQLVPHEAEKVISYILEVDSFNGVKR 200 + T + + A K+ + ++ GV R Sbjct: 129 YQVHWPQRPTNCFGKLGYSWTDSAPAVSLLDTLDALAEYQRAGKIRYIGVSNETAFGVMR 188 Query: 201 MSQEEAEAGGLLHWLGEQEDEAFTDTVAAVSVARDEITSTLGRDFKIVYTPLHGTGNLPV 260 + + + +A + TG Sbjct: 189 YLHLADKHDLPRIVTIQNPYSLLNRSFEVG-LAEVSQYEGVELLAYSCLGFGTLTGKYLN 247 Query: 261 RSVLSKIGFTQVHVVPEQELPDSEFSTVKSPNPEEREAFTLAIKLGEELGADLLIGTDPD 320 + + T ++ + + R A + + + Sbjct: 248 GAKPAGARNTLFSRFTRYSGEQTQKAVAAYVDIARRHGLDPAQMALAFVRRQPFVASTLL 307 Query: 321 ADRMGAVVRDNEGKFVVLSGNQSGALMIHYYLSRLQEQGKLPSNGAVVKTIVTSEMGAAV 380 Sbjct: 308 367 Query: 381 AEHYGATVFNTLTGFKYIGEKMTQFQQSGEYTYLFGYEESYGYLAGNYARDKDAVLASML 440 Sbjct: 368 427 Query: 441 IAEAGAYYKAQGKTLYDVLQELYEQFGYFLESLESRTLKGKDGVAQIQGIMNDWRSNPPQ 500 Sbjct: 428 487 Query: 501 EIAGAAVSEVLDY-----------SLGLNGLPKENVLKYLLSDGSWFCLRPSGTEPKIKV 549 Sbjct: 488 547 Query: 550 YFAVRGESLQNAKDKVATLTQQV 572 Sbjct: 548 570 >lin2618 [G] COG1109 Phosphomannomutase Length = 346 Score = 516 bits (1329), Expect = e-146, Method: Compositional matrix adjust. Identities = 0/573 (0%), Positives = 0/573 (0%), Gaps = 12/573 (2%) Query: 17 ETLSRWLQDPSVDENTKAELNLLANEPQELEERFYRDLEFGTGGLRGVIGAGSNRINRYT 76 L+ ++ T + + + + + + Sbjct: 5 RIPHSSLEVSTLGLGTMTFGEQNSEADAHAQLDYAVAQGINLIDVAEMYPVPPRPETQGL 64 Query: 77 VGRATQGFANYILEQHTGEGRPSVVIAHDSRRFSPEFTLEAALVLAGNGIEAHLFPSLRS 136 + + V + + L Sbjct: 65 TETYVGNWLAKHGSREKLIIASKVSGPSRNNDKGIRPDQALDRKNIREALHDSLKRLQTD 124 Query: 137 TPQLSFTVRHLKATGGVVITASHNPPEYNGYKVYNAEGGQLVPHEAEKVISYILEVDSFN 196 L + T + + A K+ + ++ Sbjct: 125 YLDLYQVHWPQRPTNCFGKLGYSWTDSAPAVSLLDTLDALAEYQRAGKIRYIGVSNETAF 184 Query: 197 GVKRMSQEEAEAGGLLHWLGEQEDEAFTDTVAAVSVARDEITSTLGRDFKIVYTPLHGTG 256 GV R + + + +A + TG Sbjct: 185 GVMRYLHLADKHDLPRIVTIQNPYSLLNRSFEVG-LAEVSQYEGVELLAYSCLGFGTLTG 243 Query: 257 NLPVRSVLSKIGFTQVHVVPEQELPDSEFSTVKSPNPEEREAFTLAIKLGEELGADLLIG 316 + + T ++ + + R A + + Sbjct: 244 KYLNGAKPAGARNTLFSRFTRYSGEQTQKAVAAYVDIARRHGLDPAQMALAFVRRQPFVA 303 Query: 317 TDPDADRMGAVVRDNEGKFVVLSGNQSGALMIHYYLSRLQEQGKLPSNGAVVKTIVTSEM 376 Sbjct: 304 363 Query: 377 GAAVAEHYGATVFNTLTGFKYIGEKMTQFQQSGEYTYLFGYEESYGYLAGNYARDKDAVL 436 Sbjct: 364 423 Query: 437 ASMLIAEAGAYYKAQGKTLYDVLQELYEQFGYFLESLESRTLKGKDGVAQIQGIMNDWRS 496 Sbjct: 424 483 Query: 497 NPPQEIAGAAVSEVLDYSLGLNG-----------LPKENVLKYLLSDGSWFCLRPSGTEP 545 Sbjct: 484 543 Query: 546 KIKVYFAVRGESLQNAKDKVATLTQQVMSRVDG 578 Sbjct: 544 576 >SPy1224 [G] COG1109 Phosphomannomutase Length = 346 Score = 504 bits (1298), Expect = e-142, Method: Compositional matrix adjust. Identities = 0/570 (0%), Positives = 0/570 (0%), Gaps = 13/570 (2%) Query: 17 ETLSRWLQDPSVDENTKAELNLLANEPQELEERFYRDLEFGTGGLRGVIGAGSNRINRYT 76 L+ ++ T N + + + G + Sbjct: 5 RIPHSSLEVSTLGLGTMTFG--EQNSEADAHAQLDYAVAQGINLIDVAEMYPVPPRPETQ 62 Query: 77 VGRATQGFANYILEQHTGEGRPSVVIAHDSRRFSPEFTLEAALVLAGNGIEAHLFPSLRS 136 T + + ++ SR + AL H Sbjct: 63 GLTETYVGNWLAKHGSREKLIIASKVSGPSRNNDKGIRPDQALDRKNIREALHDSLKRLQ 122 Query: 137 TPQLSFTVRHLKATGGVVITASHNPPEYNGYKVYNAEGGQLVPHEAEKVISYILEVDSFN 196 T L H + V + + + V + Sbjct: 123 TDYLDLYQVHWPQRPTNCFGKLGYSWTDSAPAVSLLDTLDALAEYQRAGKIRYIGVSNET 182 Query: 197 GVKRMSQEEAEAGGLLHWLGEQEDEAFTDTVAAVSVARDEITSTLGRDFKIVYTPLHGTG 256 M L + ++ + + G + GT Sbjct: 183 AFGVMRYLHLADKHDLPRIVTIQNPYSLLNRSFEVGLAEVSQY-EGVELLAYSCLGFGTL 241 Query: 257 NLPVRSVLSKIGFTQVHVVPEQELPDSEFSTVKSPNPEEREAFTLAIKLGEELGADLLIG 316 + G + + + L Sbjct: 242 TGKYLNGAKPAGARNTLFSRFTRYSGEQTQKAVAAYVDIARRHGLDPAQMALAFVRRQPF 301 Query: 317 TDPDADRMGAVVRDNEGKFVVLSGNQSGALMIHYYLSRLQEQGKLPSNGAVVKTIVTSEM 376 Sbjct: 302 361 Query: 377 GAAVAEHYGATVFNTLTGFKYIGEKMTQFQQSGEYTYLFGYEESYGYLAGNYARDKDAVL 436 Sbjct: 362 421 Query: 437 ASMLIAEAGAYYKAQGKTLYDVLQELYEQFGYFLESLESRTLKGKDGVAQIQGIMNDWRS 496 Sbjct: 422 481 Query: 497 NPPQEIAGAAVSEVLDY----------SLGLNGLPKENVLKYLLSDGSWFCLRPSGTEPK 546 Sbjct: 482 541 Query: 547 IKVYFAVRGESLQNAKDKVATLTQQVMSRV 576 Sbjct: 542 571 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.314 0.133 0.378 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 45,220,475 Number of extensions: 2065317 Number of successful extensions: 5002 Number of sequences better than 1.0e-05: 100 Number of HSP's gapped: 4828 Number of HSP's successfully gapped: 106 Length of query: 579 Length of database: 38,378,431 Length adjustment: 112 Effective length of query: 467 Effective length of database: 25,461,023 Effective search space: 11890297741 Effective search space used: 11890297741 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 119 (50.4 bits)