BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0320.0016.p (636 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value CAC0542 [NT] COG0840 Methyl-accepting chemotaxis protein 150 8e-36 PH0491 [NT] COG0840 Methyl-accepting chemotaxis protein 82 2e-15 BS_mcpA [NT] COG0840 Methyl-accepting chemotaxis protein 66 2e-10 TM1428 [NT] COG0840 Methyl-accepting chemotaxis protein 65 3e-10 STM0429 [P] COG1840 ABC-type Fe3+ transport system, periplasmic ... 62 4e-09 >CAC0542 [NT] COG0840 Methyl-accepting chemotaxis protein Length = 575 Score = 150 bits (378), Expect = 8e-36, Method: Compositional matrix adjust. Identities = 115/341 (33%), Positives = 182/341 (53%), Gaps = 18/341 (5%) Query: 276 ISSPIIK----LTELINRTAELDLKYDTQYEYLTKNKDETG--TIAKAMFHTRAVLREMA 329 I+ PI+K + E+I+ D D KDE G T+ F R L ++ Sbjct: 214 IARPIVKASRAIKEIISDIENND--GDLSKRIYVNTKDEIGELTLGVDAFIER--LEDII 269 Query: 330 GSLVTISTKVLDNAETL-EKLS---IDVRENAHDNSATTEQLSAGMEETAASTQEMTAAI 385 G + T S + +++ L E++S I V E SAT ++++AGMEETAAS +E+ A+ Sbjct: 270 GKIRTSSATLEGSSKLLLEQISSSNIKVEET----SATVQEIAAGMEETAASVEEINAST 325 Query: 386 HEVENNVRVISGRVKEGAGVSVQITERALALQHDATESISNTREIYDSVKVEMQKAIEQS 445 ++EN V I+ + + G+ + ++ +A ++ A S EI V+ ++KA+ +S Sbjct: 326 DDIENAVEKIALKAQSGSVATQKVNSKANEIKVKAVSSQKAASEIIQVVQENLEKALVKS 385 Query: 446 DSIHEINVLADTILSITSQTXXXXXXXXXXXXXXXXXXXXXXXXXXXIRKLAEKSSETAA 505 + +IN+L +IL IT QT I+ LAE S A+ Sbjct: 386 KDVEKINLLTSSILEITEQTNVLALNAAIEASRAGEAGKGFAVVADEIKALAEDSGRIAS 445 Query: 506 GIQDVVKNVYSSVEQMKGNSEAILDFIDQNVLGDYERLAEVSEQYNSDATAINGLMSQFE 565 IQ + V SV+ + G+S+++LDFI V+ DY+ VSE+Y +DATAI+ LM+ F Sbjct: 446 EIQSINSIVIESVKNLAGDSKSVLDFISNQVIKDYDMFVGVSEEYTNDATAISQLMNNFN 505 Query: 566 EAADHLSETVSSIAIAVNEVATTVNEGAVGVQDIAVKTADI 606 + AD L +V+ I IA+NEV+ T+NEGAVG Q+IA K + + Sbjct: 506 DTADQLKTSVNGIVIAINEVSRTINEGAVGTQNIAEKASQL 546 >PH0491 [NT] COG0840 Methyl-accepting chemotaxis protein Length = 739 Score = 82.4 bits (202), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 98/425 (23%), Positives = 183/425 (43%), Gaps = 55/425 (12%) Query: 48 DPLRAEVNAKFQQMVKNAGNLEHIFVADMKG-IGIADSDTKLIGADFSERNYTKNVLKTA 106 D +R + +F+++ ++ +++ D +G + + D G D R + K + Sbjct: 95 DMMRQFLLERFKKIKDLNEDVSYVYFGDEQGHMYMYPPDELPEGYDPRVRPWYKLAKEKN 154 Query: 107 GPVVSETLKSKSTGAYVLAFIHPVMSGGKMIGFVGSAVNANSIIKYLADAKVANAPSSYA 166 GPV++E + +TG +V+ + PV G+ G +G V ++++K K+ + Y Sbjct: 155 GPVITEPYRDAATGKWVITYSEPVYVNGEFKGVIGIDVFVSTLVKETQSIKLGK--TGYV 212 Query: 167 YLVDETGNILYHPDEAKIG--SPLENAQMKAVVERVKAGETVADGNVEYTFNGAEKKAAF 224 +++ G ++ HP E I + + ++K + ++ G+ G V YTF G +K A + Sbjct: 213 AVLNPQGLVIIHPKEEYINKLNIFQTPELKDLANELRKGKE--RGYVVYTFEGIKKVAGY 270 Query: 225 TVLPETKWTLVLTGDIDEVMKP-----------VNNMTNFXXXXXXXXXXXXXXXXXXXA 273 + +T W ++ T ++E+ +P V+ M A Sbjct: 271 RRMKQTGWIVLATVPLEEITEPTLKAADSVVKDVSEMIYKGFGIAIIAIVAMIVAMYKVA 330 Query: 274 TRISSPIIKLTELINRTAELDLKYDTQY----EYLTKNKDETGTIAKAMFHTRAVLREMA 329 I +P+ KL A L+ T+Y YL DE G + +A AV +++ Sbjct: 331 GSILAPLEKLKMAAQALANGKLREVTEYVKEIRYL--ENDEIGALIQAF---EAVSKDLV 385 Query: 330 GSLVTISTKVLDNAETLEKLSIDVRENAHDNSATTEQLSAGMEETAASTQEMTAAIHEVE 389 G+L I+ + LE+L+ E N T E +++ I V Sbjct: 386 GTLTAITKR-------LERLA----EGDLTNGLTV--------EAKGELRDLIEDIKSVT 426 Query: 390 NNVRVISGRVKEGAGVSVQITERALAL---QHDATESISNTREIYDSVKVEMQKAIEQSD 446 N +R G + + A ++ +RA AL +D TE+I+ E V VE Q+ Q + Sbjct: 427 NTLRTSIGSLVDMAN---ELEKRANALAQISNDVTEAINQVNEAIQQVSVEAQR---QQE 480 Query: 447 SIHEI 451 +I+EI Sbjct: 481 TINEI 485 >BS_mcpA [NT] COG0840 Methyl-accepting chemotaxis protein Length = 661 Score = 65.9 bits (159), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 120/603 (19%), Positives = 248/603 (41%), Gaps = 52/603 (8%) Query: 52 AEVNAKFQQMVKNAGNLEHIFVADMKGIGIADSDTKLI-GADFSERNYTKNVLKTAGPVV 110 A + KF Q + ++E I+ +D KG D + G + ER++ K + G VV Sbjct: 92 ASIREKFSQYISINKDVESIYTSDTKGHFTRYPDLPMPSGYNPVERDWYKKAVANKGKVV 151 Query: 111 -SETLKSKSTGAYVLAFIHPVMSGGKMIGFVGSAVNANSIIKYLADAKVAN-APSSYAYL 168 ++ K+ ST V+ G +I A+N +I L K N YA++ Sbjct: 152 ITDPYKTASTNTMVVTIAQQTKDGSGVI-----AINM-TIENLLKTTKKVNIGTQGYAFI 205 Query: 169 VDETGNILYHPDEAKIGSPLENAQMKAVVERVKAGETVADGNVEYTFNGAEKKAAFTVLP 228 + + ++ HP+E G+ L+ + ++ K G+ +YT +G +KK AF Sbjct: 206 MTKDKKVVAHPNEQS-GTELKGDWLDKMLSADK-------GDFQYTMDGDKKKMAFDTNK 257 Query: 229 ETKWTLVLTGDIDEVMKPVNNMTNFXXXXXXXXXXXXXXXXXXXATRISSPIIKLTELIN 288 T W + T +DE+ + + + I++P+ +L Sbjct: 258 LTGWKIGGTMYLDEIHEAAQPVLHLALIVLAAAIIIGIIVMTLIIRSITTPLKQLVGSSK 317 Query: 289 RTAELDLKYDTQYEYLTKNKDETGTIAKAMFHTRAVLREMAGSLVTISTKVLDNAETLEK 348 R +E DL ++KDE G + K+ MA SL ++ + D+ + + Sbjct: 318 RISEGDLTETIDI----RSKDELGELGKS-------FNNMASSLRSLIHAIQDSVDNVAA 366 Query: 349 LSIDVRENAHDNSATTEQLSAGMEETAASTQEMTAAIHEVENNVRVISGRVKEGAGVSVQ 408 S ++ +A S TE ++ +E+ + ++ I ++ ++ + A S Sbjct: 367 SSEELTASAAQTSKATEHITLAIEQFSNGNEKQNENIETAAEHIYQMNDGLTNMAQASEV 426 Query: 409 ITERALALQHDATESISNTREIYDSVKVEMQKAIEQSDSI--------HEINVLADTILS 460 IT+ ++ A+E + + V + K++++++ + +I + I Sbjct: 427 ITDSSVQSTEIASEGGKLVHQTVGQMNV-IDKSVKEAEQVVRGLETKSKDITNILRVING 485 Query: 461 ITSQTXXXXXXXXXXXXXXXXXXXXXXXXXXXIRKLAEKSSETAAGIQ----DVVKNVYS 516 I QT +RKLA +S+++A I+ ++VK + + Sbjct: 486 IADQTNLLALNAAIEAARAGEYGRGFSVVAEEVRKLAVQSADSAKEIEGLIIEIVKEINT 545 Query: 517 SVEQMKGNSEAI---LDFIDQNVLGDYERLAEVSEQYNSDATAINGLMSQFEEAADHLSE 573 S+ + ++ + LD D+ + ++R++E++ Q I G + LS Sbjct: 546 SLGMFQSVNQEVQTGLDITDKTEMS-FKRISEMTNQ-------IAGELQNMSATVQQLSA 597 Query: 574 TVSSIAIAVNEVATTVNEGAVGVQDIAVKTADIVEKTFHEAKMADENTQSAKEMQRLVEQ 633 + ++ A +A+ E + +QDIA + + + A+ + A+E++ + ++ Sbjct: 598 SSEEVSGASEHIASISKESSAHIQDIAASAEEQLASMEEISSSAETLSSMAEELRDMTKR 657 Query: 634 FKI 636 FKI Sbjct: 658 FKI 660 >TM1428 [NT] COG0840 Methyl-accepting chemotaxis protein Length = 566 Score = 65.5 bits (158), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 125/517 (24%), Positives = 218/517 (42%), Gaps = 66/517 (12%) Query: 156 AKVANAPSSYAYLVDETGNILYHPDEAKI-GSPLENAQMKAVV----ERVKAGETVADGN 210 K+ ++Y ++ D +++HP + ++ G L N + V E VK + +G Sbjct: 80 GKIRYDDNNYFWINDTHPRMVFHPIKPEMNGQDLSNYKDPNGVYLFNEMVKVAKEKGEGF 139 Query: 211 VEYTFNGA-----EKKAAFTVLPETKWTLVLTG-DIDEVMKPVNNMTNFXXXXXXXXXXX 264 V Y++ A E K ++ L E +V TG +D+V V N+ F Sbjct: 140 VSYSWPKAGSDKPEPKISYVKLFEPWGWIVGTGIYVDDVKVTVGNLI-FRNVLTVSVIGI 198 Query: 265 XXXXXXXXATRISS----PIIKLTELINRTAELDLKYDTQYEYLTKNKDETGTIAKAMFH 320 R+ S ++ E I+ + +L + D K+KDE G IA+ + Sbjct: 199 AVIIMIFFYGRVLSRKTKAVLSALEKIS-SGDLSVSVDI------KSKDEFGLIAQKLNE 251 Query: 321 TRAVLREM--------------AGSLVTISTKVLDNAETLEKLSIDVRENAHDNSATTEQ 366 T LR+M + L +S ++ E + + S + + + SA+ E+ Sbjct: 252 TVGNLRKMVQEIDKSQDEVERVSEELFALSQQLRSALEEIARASDTISKEVQNASASIEE 311 Query: 367 LSAGMEETAASTQEMTAAIHEVENNVRVISGRVKEGAGVSVQITERALALQHDATESISN 426 +++G EE +A++Q ++ I E+ N I+ + G ++ E A+ D +E N Sbjct: 312 VTSGSEEVSANSQNISKLIQEISENADNIADFARNGQ----RVLEEAVKKVEDVSE---N 364 Query: 427 TREIYDSVKVEMQKAIEQSDSIHEINVLADTILSITSQTXXXXXXXXXXXXXXXXXXXXX 486 +RE D V E + +I EI TI SI QT Sbjct: 365 SRETADVV----SNVTESARNIEEI---VRTIQSIAEQTNLLALNAAIEAARAGEAGRGF 417 Query: 487 XXXXXXIRKLAEKSSETAAGIQDVVKNVYSSVEQMKGNSEAILDFIDQNVLGDYERLAEV 546 IRKLAE+S + I +++N+ VE+ S+ ++ + D RL E Sbjct: 418 AVVADEIRKLAEESQKATEEISQILENIREGVERTNEMSKKNVE-----ITKDARRLVEE 472 Query: 547 S-EQYNSDATAINGLMSQFE---EAADHLSETVSSIAIAVNEVATTVNEGAVGVQDIAVK 602 S E +N T I L ++ E +A LS ++ A++ VA T A V+++ Sbjct: 473 SYESFNQIVTRIEDLAARIEGIAASAQELSAASEEMSSALDAVAKTTTTVADEVEEV--- 529 Query: 603 TADIVEKTFHEAKMADENTQSAK---EMQRLVEQFKI 636 + +I E+ ++AD T+ K E++ VE+FKI Sbjct: 530 SENITEQEKAAKRIADIGTELKKLSDELKEDVERFKI 566 >STM0429 [P] COG1840 ABC-type Fe3+ transport system, periplasmic component Length = 337 Score = 61.6 bits (148), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 0/449 (0%), Positives = 0/449 (0%), Gaps = 61/449 (13%) Query: 120 GAYVLAFIHPVMSGGKMIGFVGSAVNA--NSIIKYLADAKVANAPSSYAYLVDETGNILY 177 + G G ++ Sbjct: 145 DGKFKNKLQYSTPGQAADGTAVMLQAFHSFGSKDAGFAYLGKLQANNVGPSASTGKLTAL 204 Query: 178 HPDEAKIGSPLENAQ----MKAVVERVKAGETVADGNVEYTFNGAEKKAAFTVLPETKWT 233 + N + + + + + Sbjct: 205 VNK---GEIYVANGDLQMNLAQMERNPNVK---IFWPANDKGERSALAIPYVIGLVQGAP 258 Query: 234 LVLTGDIDEVMKPVNNMTNFXXXXXXXXXXXXXXXXXXXATRISSPIIKLTELINRTAEL 293 G + ++ ++ + + Sbjct: 259 QSENGKKLINFLLSKEAQTRVSELSWGMPVRSDVTPSDEHYKAATAALEGVQSWQPNWDD 318 Query: 294 DLKYDTQYEYLTKNKDETGTIAKAMFHTRAVLREMAGSLVTISTKVLDNAETLEKLSID- 352 Sbjct: 319 VA---- 374 Query: 353 --VRENAHD------------NSATTEQLSAGMEETAASTQEMTAAIHEVENNVRVISGR 398 Sbjct: 375 - 433 Query: 399 VKEGAGVSVQITERALA-------LQHDATESISNTREIYDSVKVEMQKAIEQSDSIHEI 451 Sbjct: 434 ------------------ 475 Query: 452 NVLADTILSITSQTXXXXXXXXXXXXXXXXXXXXXXXXXXXIRKLAEKSSETAAGIQDVV 511 Sbjct: 476 --- 532 Query: 512 KNVYSSVEQMKGNSEAILDFIDQ-NVLGD 539 Sbjct: 533 561 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.310 0.125 0.324 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 36,479,754 Number of extensions: 1363963 Number of successful extensions: 6074 Number of sequences better than 1.0e-05: 633 Number of HSP's gapped: 4807 Number of HSP's successfully gapped: 635 Length of query: 636 Length of database: 38,378,431 Length adjustment: 113 Effective length of query: 523 Effective length of database: 25,345,689 Effective search space: 13255795347 Effective search space used: 13255795347 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.8 bits) S2: 119 (50.4 bits)