BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0320.0015.p (447 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BH2109 [T] COG4753 Response regulator containing CheY-like recei... 71 4e-12 BH1123 [T] COG4753 Response regulator containing CheY-like recei... 70 6e-12 BH2728 [T] COG4753 Response regulator containing CheY-like recei... 70 9e-12 VC1260 [K] COG2207 AraC-type DNA-binding domain-containing proteins 69 2e-11 BH0793 [T] COG4753 Response regulator containing CheY-like recei... 67 5e-11 >BH2109 [T] COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain Length = 525 Score = 70.9 bits (172), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 36/135 (26%), Positives = 76/135 (56%), Gaps = 6/135 (4%) Query: 307 SHDEVRRLLDEL---AQLVMEEVKKVRFSDGWHLIEAVRKYAGENFCCRLEISSLAEMFY 363 + D+++++ + A ++++E++K I V+ Y ++ + + S+A +FY Sbjct: 392 TFDQLKQVFTKFVLEAAVIIQELRKENMKSD---IYKVKTYIENHYHENISLKSIASLFY 448 Query: 364 LNEADLPRQFKQHVGITFSDYITKLRMTKAEQLLQDNGLKVGDIARLAGYSGFSGFSTAF 423 +N + + FK+ G+ F +Y+ KLRM +A++LL+ ++V ++A G+ F T F Sbjct: 449 MNPVYMGQLFKKTFGVYFKEYLLKLRMNEAKKLLRQTDMRVYEVAERVGFGSTDYFVTQF 508 Query: 424 KKYSGQSPKEYRERL 438 +K + +P EYR +L Sbjct: 509 EKINKMTPTEYRNKL 523 >BH1123 [T] COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain Length = 526 Score = 70.1 bits (170), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 34/124 (27%), Positives = 70/124 (56%), Gaps = 7/124 (5%) Query: 317 ELAQLVMEEVKKVRFSDGW-------HLIEAVRKYAGENFCCRLEISSLAEMFYLNEADL 369 E + + E+++ + + W LIE V Y ++ + + +A+ Y++ L Sbjct: 398 EWIRFLCEQIEHICYHQQWDENIKHKQLIEQVMIYIEKHLAENITLQDIADELYISRNYL 457 Query: 370 PRQFKQHVGITFSDYITKLRMTKAEQLLQDNGLKVGDIARLAGYSGFSGFSTAFKKYSGQ 429 + FK+ VG +F +Y+T+LRM KA++++Q+ + +++ GY + F+T FKKY+G Sbjct: 458 GQIFKKVVGESFKNYVTRLRMEKAKKMIQEGNFLIYEVSEKVGYVNPAYFTTMFKKYTGY 517 Query: 430 SPKE 433 +P++ Sbjct: 518 TPRD 521 >BH2728 [T] COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain Length = 510 Score = 69.7 bits (169), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 42/127 (33%), Positives = 66/127 (51%), Gaps = 2/127 (1%) Query: 311 VRRLLDELAQL--VMEEVKKVRFSDGWHLIEAVRKYAGENFCCRLEISSLAEMFYLNEAD 368 VR D Q V +++ V ++G I+ + Y E+ L +S LA F+ N + Sbjct: 373 VREATDCFYQFLEVTKQIISVYSNEGSSSIQKMLAYIEEHHSEPLSLSQLANYFHFNPSY 432 Query: 369 LPRQFKQHVGITFSDYITKLRMTKAEQLLQDNGLKVGDIARLAGYSGFSGFSTAFKKYSG 428 L F+QH FS+Y+ K+R+ KA++ L+ + + + +I L GYS S F FKK +G Sbjct: 433 LSAYFRQHHDEGFSEYLNKVRIRKAKEWLKSSTIPISEIYALVGYSDHSYFCKVFKKRTG 492 Query: 429 QSPKEYR 435 P YR Sbjct: 493 MPPSRYR 499 >VC1260 [K] COG2207 AraC-type DNA-binding domain-containing proteins Length = 299 Score = 68.6 bits (166), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 31/107 (28%), Positives = 61/107 (57%) Query: 332 SDGWHLIEAVRKYAGENFCCRLEISSLAEMFYLNEADLPRQFKQHVGITFSDYITKLRMT 391 SD I+ ++Y +++ ++I+ L +L+E+ R F++H G++FS+++ + R+ Sbjct: 188 SDTHKKIQLAKQYVEQHYAQAIKITDLCHQLHLSESSAYRLFEKHYGMSFSEHLKQFRIG 247 Query: 392 KAEQLLQDNGLKVGDIARLAGYSGFSGFSTAFKKYSGQSPKEYRERL 438 KA +LL + L + IA G+ S F+ FK +P+E+R+R Sbjct: 248 KACELLASSALPIALIAERTGFGNLSNFNRQFKTLKTMTPREFRQRF 294 >BH0793 [T] COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain Length = 508 Score = 67.4 bits (163), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 35/135 (25%), Positives = 74/135 (54%) Query: 302 IVNARSHDEVRRLLDELAQLVMEEVKKVRFSDGWHLIEAVRKYAGENFCCRLEISSLAEM 361 IV+ + E +++D L+ ++ + + +I+ V ++ ++F L + +L Sbjct: 369 IVHVETTSEAMKMIDRCIDLLEDDHLQENEKNYSPIIQTVLQHIHQHFSQDLSLKTLGHS 428 Query: 362 FYLNEADLPRQFKQHVGITFSDYITKLRMTKAEQLLQDNGLKVGDIARLAGYSGFSGFST 421 F++N L + F++ VG +F+ Y+ +LR+ +A++LL ++ + G I + GY + F Sbjct: 429 FHINPIYLGQLFQREVGCSFTKYLNQLRIDRAKKLLLNSYDRAGQIGKKVGYGDATYFYK 488 Query: 422 AFKKYSGQSPKEYRE 436 FKKY +P E+R+ Sbjct: 489 QFKKYEAMTPTEWRK 503 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.320 0.135 0.397 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 31,323,615 Number of extensions: 1288464 Number of successful extensions: 4749 Number of sequences better than 1.0e-05: 72 Number of HSP's gapped: 4766 Number of HSP's successfully gapped: 72 Length of query: 447 Length of database: 38,378,431 Length adjustment: 110 Effective length of query: 337 Effective length of database: 25,691,691 Effective search space: 8658099867 Effective search space used: 8658099867 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 117 (49.7 bits)