BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0320.0005.p (631 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value CAC1407_2 [G] COG1263 Phosphotransferase system IIC components, ... 531 e-150 lin0026_2 [G] COG1263 Phosphotransferase system IIC components, ... 490 e-138 BH0595_2 [G] COG1263 Phosphotransferase system IIC components, g... 457 e-128 L90678_2 [G] COG1263 Phosphotransferase system IIC components, g... 271 3e-72 bglF_2 [G] COG1263 Phosphotransferase system IIC components, glu... 271 3e-72 >CAC1407_2 [G] COG1263 Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific Length = 379 Score = 531 bits (1368), Expect = e-150, Method: Compositional matrix adjust. Identities = 263/379 (69%), Positives = 314/379 (82%), Gaps = 1/379 (0%) Query: 96 LFNKFIDMISGVFTPTLGVLSATGMIKGFAALFLSLGVLTNTSGTYQILNAIGDCLFYFF 155 LFN FID ISGVFTPTLGVL+ATGMIKGF A+F++ G LT TSGTY ILNA+GDCLFYFF Sbjct: 2 LFNAFIDTISGVFTPTLGVLAATGMIKGFNAMFIAFGWLTKTSGTYNILNAVGDCLFYFF 61 Query: 156 PIFLGYTSAKKFNTHIFIGMAIGATLVYPTFSSITASGKPLYTLFSGTVIESPVYLTFLG 215 PIFLGY++AKKF + FIGMAIGA+LVYPT S++ +GKPLYTLF GT+ SPVY+TFLG Sbjct: 62 PIFLGYSAAKKFKGNHFIGMAIGASLVYPTLSTLM-TGKPLYTLFQGTIFASPVYVTFLG 120 Query: 216 IPVILMSYASSVIPIILSTYVGGKIEGFFKKIIPSVVRTFLVPFCTLLVIVPLALIFIGP 275 IPVILMSY+S+VIPIIL++YVG K+E F KIIP VV+TFLVPFCTLLV+VPL+LI IGP Sbjct: 121 IPVILMSYSSTVIPIILASYVGVKVEKAFAKIIPDVVKTFLVPFCTLLVMVPLSLIVIGP 180 Query: 276 VATWAGQLLGAGTLFIYNLSPVIAGVLLGGFWQVFVIFGLHWGFVPIAINNMTVFGYDTI 335 ++TWAG+LLGAGTL IYNLSP++AG+ +G FWQVFVIFGLHWG VPIA+NN++V YD I Sbjct: 181 ISTWAGKLLGAGTLAIYNLSPILAGLFIGAFWQVFVIFGLHWGLVPIAMNNLSVLHYDPI 240 Query: 336 LAGVFGASFAQTGVVLAILLRTKNIKLKSLSVPAVISGIFGVTEPAIYGITLPRKKPFIL 395 LAG GASFAQTGVVLAIL++TKN+KLK +++PA ISGIFGVTEPAIYG+TLPRKKPFI+ Sbjct: 241 LAGTLGASFAQTGVVLAILIKTKNVKLKGIALPAFISGIFGVTEPAIYGVTLPRKKPFII 300 Query: 396 SCXXXXXXXXXXXXXXXXXXXXXXLGIFGIPSYISPEGMDRGFMGAVIGISVSFVLGFLL 455 SC LGIF IPSYI +GMDRGF GAV+ + +SFV+GFL+ Sbjct: 301 SCIGAAIGGGITGFMGTKLWMMGGLGIFAIPSYIGAKGMDRGFYGAVMSVVISFVVGFLI 360 Query: 456 MYFGGFKDDEVKQDNKEPR 474 M+F GFKD+EVKQ+ + + Sbjct: 361 MFFAGFKDEEVKQETTKKK 379 >lin0026_2 [G] COG1263 Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific Length = 399 Score = 490 bits (1262), Expect = e-138, Method: Compositional matrix adjust. Identities = 250/400 (62%), Positives = 304/400 (76%), Gaps = 7/400 (1%) Query: 87 AEASDEKV----GLFNKFIDMISGVFTPTLGVLSATGMIKGFAALFLSLGVLTNTSGTYQ 142 AE D V +FN+FIDMISGVFTP LGVL+ATGMIKGF A+F + G +T TSGTYQ Sbjct: 1 AEGDDSNVPASGNIFNRFIDMISGVFTPVLGVLAATGMIKGFTAMFAAFGWITVTSGTYQ 60 Query: 143 ILNAIGDCLFYFFPIFLGYTSAKKFNTHIFIGMAIGATLVYPTFSSITASGKPLYTLFSG 202 +L AIGDCLFYFFPIFLG+T+ KKF +IFIGMAIG LVYPT + I+A G P+YTLF+G Sbjct: 61 LLYAIGDCLFYFFPIFLGFTAMKKFGGNIFIGMAIGGALVYPTLAGISA-GDPIYTLFAG 119 Query: 203 TVIESPVYLTFLGIPVILMSYASSVIPIILSTYVGGKIEGFFKKIIPSVVRTFLVPFCTL 262 T+ ESP+++TFLGIPVILMSYASSVIPIIL+TY G K+E FKKIIP V++TF+VPFCTL Sbjct: 120 TIFESPIHVTFLGIPVILMSYASSVIPIILATYFGSKVEKGFKKIIPDVIKTFVVPFCTL 179 Query: 263 LVIVPLALIFIGPVATWAGQLLGAGTLFIYNLSPVIAGVLLGGFWQVFVIFGLHWGFVPI 322 LV+VP+ + IGP+ATWAGQLLGAGT+++YNLSPV+AG++LGGFWQVFVIFGLHWG +P+ Sbjct: 180 LVVVPITFLVIGPIATWAGQLLGAGTIWVYNLSPVVAGLILGGFWQVFVIFGLHWGLIPV 239 Query: 323 AINNMTVFGYDTILAGVFGASFAQTGVVLAILLRTKNIKLKSLSVPAVISGIFGVTEPAI 382 AINN+T G D +LA +FGASFAQ G VLA+ +T+N K+KSLS+PA ISGIFGVTEPAI Sbjct: 240 AINNLTTLGSDPVLAMMFGASFAQIGAVLAVFFKTRNKKIKSLSIPAFISGIFGVTEPAI 299 Query: 383 YGITLPRKKPFILSCXXXXXXXXXXXXXXXXXXXXXXLGIFGIPSYISP-EGMDRGFMGA 441 YG+TLP KKPFI+SC LGIFG+P++ P G+ F Sbjct: 300 YGVTLPLKKPFIMSCIAGAVGGGIIGFVSAKVYIMGGLGIFGLPNFFQPGAGITSAFWWV 359 Query: 442 VIGISVSFVLGFLLMYFGGFKDD-EVKQDNKEPRSGDPLI 480 VI I +SF+LGF+L Y GFKD E + G+ LI Sbjct: 360 VIAIVISFILGFILTYVAGFKDPAEAVVEETNVTEGETLI 399 >BH0595_2 [G] COG1263 Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific Length = 399 Score = 457 bits (1176), Expect = e-128, Method: Compositional matrix adjust. Identities = 249/394 (63%), Positives = 294/394 (74%), Gaps = 4/394 (1%) Query: 85 ASAEASDEK--VGLFNKFIDMISGVFTPTLGVLSATGMIKGFAALFLSLGVLTNTSGTYQ 142 A E DEK GLFNKFID+I+ +FTP LGVL+ATGMIKG ALFLS GVL +GTYQ Sbjct: 1 AETETEDEKKYQGLFNKFIDIIASIFTPVLGVLAATGMIKGLNALFLSTGVLEEANGTYQ 60 Query: 143 ILNAIGDCLFYFFPIFLGYTSAKKFNTHIFIGMAIGATLVYPTFSSITASGKPLYTLFSG 202 +L+AIGD LFYFFPIFLGYT+AKKF FIGMAIGA+LVYPT +T G+PLYTLF+G Sbjct: 61 LLHAIGDSLFYFFPIFLGYTAAKKFGATPFIGMAIGASLVYPTLVVLT-EGEPLYTLFTG 119 Query: 203 TVIESPVYLTFLGIPVILMSYASSVIPIILSTYVGGKIEGFFKKIIPSVVRTFLVPFCTL 262 T+ ESPV++TFLGIPVILMSYA+SVIPIIL+ Y K+E +KIIP VV+TFLVPF TL Sbjct: 120 TIFESPVHITFLGIPVILMSYATSVIPIILAAYFASKVEARLRKIIPDVVKTFLVPFFTL 179 Query: 263 LVIVPLALIFIGPVATWAGQLLGAGTLFIYNLSPVIAGVLLGGFWQVFVIFGLHWGFVPI 322 L++VPL I IGP+ATWAGQLLG TL++YNLSP+IAG LGGFWQVFVIFGLHWG +PI Sbjct: 180 LIVVPLTFIVIGPIATWAGQLLGQFTLWVYNLSPIIAGAFLGGFWQVFVIFGLHWGLIPI 239 Query: 323 AINNMTVFGYDTILAGVFGASFAQTGVVLAILLRTKNIKLKSLSVPAVISGIFGVTEPAI 382 AINN+ V G D +LA VF ASFAQ G V A+ L+ K K+K+LSVPA ISGIFGVTEPAI Sbjct: 240 AINNLVVQGSDPVLAMVFAASFAQIGAVAAVWLKIKQQKVKTLSVPAFISGIFGVTEPAI 299 Query: 383 YGITLPRKKPFILSCXXXXXXXXXXXXXXXXXXXXXXLGIFGIPSYISP-EGMDRGFMGA 441 YG+TLP K+PFI+SC LGIFGIPS++ P +GMD GF G Sbjct: 300 YGVTLPLKRPFIISCIAAAVGGAIIGLFRSQGYIIGGLGIFGIPSFLHPADGMDAGFWGI 359 Query: 442 VIGISVSFVLGFLLMYFGGFKDDEVKQDNKEPRS 475 VI + V+FVLGF+L Y G K + E ++ Sbjct: 360 VIAVVVAFVLGFILTYLFGLKSGNASDEQTETKA 393 >L90678_2 [G] COG1263 Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific Length = 386 Score = 271 bits (693), Expect = 3e-72, Method: Compositional matrix adjust. Identities = 168/386 (43%), Positives = 221/386 (57%), Gaps = 13/386 (3%) Query: 86 SAEASDEKVGLFNKFIDMISGVFTPTLGVLSATGMIKGFAALF-LSLGVLTNTSGTYQIL 144 S S +K LF++F+++ISG+F P L L+A GMIKG A+ +LG S TY + Sbjct: 3 SPADSTQKGNLFDQFVELISGIFQPILAPLAAAGMIKGVNAILSFALGQSFQASATYAVF 62 Query: 145 NAIGDCLFYFFPIFLGYTSAKKFNTHIFIGMAIGATLVYPTFSSITASGKPLYTLFSGTV 204 NA+GD LF F PIF+GYTS KKFN F+GM I A LVYP F T + T Sbjct: 63 NAMGDGLFLFLPIFIGYTSMKKFNGSPFVGMMIAAALVYPGFVDGTVAK---------TF 113 Query: 205 IESPVYLTFLGIP--VILMSYASSVIPIILSTYVGGKIEGFFKKIIPSVVRTFLVPFCTL 262 ES L+ GIP V Y SSV+PII T +E KKIIP VV+ FL PF T Sbjct: 114 AESG-GLSLFGIPFSVPTAGYGSSVMPIIAITAFAAFLEHQLKKIIPDVVKLFLTPFFTA 172 Query: 263 LVIVPLALIFIGPVATWAGQLLGAGTLFIYNLSPVIAGVLLGGFWQVFVIFGLHWGFVPI 322 ++ +PL + IGPV A LG G L + +P+I G++LG WQV V+FGLHW VP Sbjct: 173 IISIPLGFLVIGPVMNLASDALGKGLLALQGFNPIIFGLVLGFAWQVLVMFGLHWAIVPF 232 Query: 323 AINNMTVFGYDTILAGVFGASFAQTGVVLAILLRTKNIKLKSLSVPAVISGIFGVTEPAI 382 AI + +L ASFAQTG V A++L+TK+ +L+ L++PA ISG FGVTEPAI Sbjct: 233 AIIALAKGEPTALLIAASVASFAQTGAVGAVMLKTKDKRLRELAIPAFISGWFGVTEPAI 292 Query: 383 YGITLPRKKPFILSCXXXXXXXXXXXXXXXXXXXXXXLGIFGIPSYISPEGMDRGFMGAV 442 YGITLP+K+PF +SC LGIF S I+ G G + + Sbjct: 293 YGITLPKKRPFWVSCIVSGILSAVAMALGIKAYTMGALGIFSFTSNITLTGEVSGAIKIM 352 Query: 443 IGISVSFVLGFLLMYFGGFKDDEVKQ 468 I +V+ + GF++ Y GF+DD ++ Sbjct: 353 IVSAVAVIAGFVVTYLVGFEDDVIEN 378 >bglF_2 [G] COG1263 Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific Length = 361 Score = 271 bits (692), Expect = 3e-72, Method: Compositional matrix adjust. Identities = 133/307 (43%), Positives = 197/307 (64%), Gaps = 10/307 (3%) Query: 91 DEKVGLFNKFIDMISGVFTPTLGVLSATGMIKGFAALFLSLGVLTNTSGTYQILNAIGDC 150 D+K L N+F+ +ISG+FTP +G+++ATG++KG AL L+ T SGTY IL + D Sbjct: 1 DDKGNLLNRFVYVISGIFTPLIGLMAATGILKGMLALALTFQWTTEQSGTYLILFSASDA 60 Query: 151 LFYFFPIFLGYTSAKKFNTHIFIGMAIGATLVYPTFSSITASGKPLYTLFSGTVIESPVY 210 LF+FFPI LGYT+ K+F + F M IG LV+P + +G+ + Sbjct: 61 LFWFFPIILGYTAGKRFGGNPFTAMVIGGALVHPLILTAFENGQK----------ADALG 110 Query: 211 LTFLGIPVILMSYASSVIPIILSTYVGGKIEGFFKKIIPSVVRTFLVPFCTLLVIVPLAL 270 L FLGIPV L++Y+SSVIPII S ++ +E +PS ++ F P L+VI P+ Sbjct: 111 LDFLGIPVTLLNYSSSVIPIIFSAWLCSILERRLNAWLPSAIKNFFTPLLCLMVITPVTF 170 Query: 271 IFIGPVATWAGQLLGAGTLFIYNLSPVIAGVLLGGFWQVFVIFGLHWGFVPIAINNMTVF 330 + +GP++TW +L+ AG L++Y P AG ++GGFWQ+FV+FGLHWG VP+ INN TV Sbjct: 171 LLVGPLSTWISELIAAGYLWLYQAVPAFAGAVMGGFWQIFVMFGLHWGLVPLCINNFTVL 230 Query: 331 GYDTILAGVFGASFAQTGVVLAILLRTKNIKLKSLSVPAVISGIFGVTEPAIYGITLPRK 390 GYDT++ + A AQ G L + L ++ + K ++ A ++ +FG+TEPA+YG+ LPRK Sbjct: 231 GYDTMIPLLMPAIMAQVGAALGVFLCERDAQKKVVAGSAALTSLFGITEPAVYGVNLPRK 290 Query: 391 KPFILSC 397 PF+++C Sbjct: 291 YPFVIAC 297 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.322 0.142 0.413 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 45,639,272 Number of extensions: 2117878 Number of successful extensions: 5878 Number of sequences better than 1.0e-05: 141 Number of HSP's gapped: 5759 Number of HSP's successfully gapped: 142 Length of query: 631 Length of database: 38,378,431 Length adjustment: 113 Effective length of query: 518 Effective length of database: 25,345,689 Effective search space: 13129066902 Effective search space used: 13129066902 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 119 (50.4 bits)