BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0317.0012.p
         (271 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BS_spo0A_1 [T] COG0784 FOG: CheY-like receiver                        167   2e-41
BH2773_1 [T] COG0784 FOG: CheY-like receiver                          164   2e-40
CAC2071_1 [T] COG0784 FOG: CheY-like receiver                         146   3e-35
BS_yvfU [TK] COG2197 Response regulator containing a CheY-like r...    76   5e-14
AF1042 [T] COG0784 FOG: CheY-like receiver                             76   7e-14

>BS_spo0A_1 [T] COG0784 FOG: CheY-like receiver
          Length = 120

 Score =  167 bits (423), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 79/122 (64%), Positives = 98/122 (80%), Gaps = 2/122 (1%)

Query: 1   VQNIEVLLADDNREFTNLLAEYITEQEDMTVTGIAYNGEEVLQMLSEARKIPDVLILDII 60
           ++ I+V +ADDNRE  +LL+EYI  QEDM V G+AYNG+E L +  E  K PDVL+LDII
Sbjct: 1   MEKIKVCVADDNRELVSLLSEYIEGQEDMEVIGVAYNGQECLSLFKE--KDPDVLVLDII 58

Query: 61  MPHLDGLGVLERLRDMDLKPEPKIIMLTAFGQENITQRAVQLGASYYILKPFDMEVLANR 120
           MPHLDGL VLERLR+ DLK +P +IMLTAFGQE++T++AV LGASY+ILKPFDME L   
Sbjct: 59  MPHLDGLAVLERLRESDLKKQPNVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGH 118

Query: 121 VR 122
           +R
Sbjct: 119 IR 120


>BH2773_1 [T] COG0784 FOG: CheY-like receiver
          Length = 120

 Score =  164 bits (414), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 75/122 (61%), Positives = 100/122 (81%), Gaps = 2/122 (1%)

Query: 1   VQNIEVLLADDNREFTNLLAEYITEQEDMTVTGIAYNGEEVLQMLSEARKIPDVLILDII 60
           +Q ++V +ADDNRE  NLL +Y++ Q+DM V G+A+NG+E L ++ E +  PDVLILDII
Sbjct: 1   MQKVKVCIADDNRELVNLLNDYVSAQDDMEVVGVAFNGQECLSIVEERQ--PDVLILDII 58

Query: 61  MPHLDGLGVLERLRDMDLKPEPKIIMLTAFGQENITQRAVQLGASYYILKPFDMEVLANR 120
           MPHLDGL VLE+L  M+L+ +P IIMLTAFGQE++T++AV LGASYY+LKPFDME+L N 
Sbjct: 59  MPHLDGLAVLEKLPYMNLQTKPNIIMLTAFGQEDVTKKAVDLGASYYVLKPFDMEILINN 118

Query: 121 VR 122
           +R
Sbjct: 119 IR 120


>CAC2071_1 [T] COG0784 FOG: CheY-like receiver
          Length = 162

 Score =  146 bits (369), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 67/121 (55%), Positives = 93/121 (76%), Gaps = 2/121 (1%)

Query: 4   IEVLLADDNREFTNLLAEYITEQEDMTVTGIAYNGEEVLQMLSEARKIPDVLILDIIMPH 63
           I VL+ADDN+EF N+L +Y+  Q DM V GIA +G E L+++    K PD+++LDIIMP 
Sbjct: 6   ISVLIADDNKEFCNILNDYLLNQSDMIVVGIAKDGVEALKLIE--NKKPDLVVLDIIMPR 63

Query: 64  LDGLGVLERLRDMDLKPEPKIIMLTAFGQENITQRAVQLGASYYILKPFDMEVLANRVRQ 123
           LDGLGVLE+L + D +  P+II+L+A GQ+ ITQRA+ LGA YY++KPFDM+V  NR+R+
Sbjct: 64  LDGLGVLEKLNNKDAENLPRIIVLSAVGQDKITQRAITLGADYYVVKPFDMDVFTNRIRE 123

Query: 124 L 124
           +
Sbjct: 124 M 124


>BS_yvfU [TK] COG2197 Response regulator containing a CheY-like receiver
           domain and an HTH DNA-binding domain
          Length = 200

 Score = 76.3 bits (186), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 48/122 (39%), Positives = 68/122 (55%), Gaps = 4/122 (3%)

Query: 4   IEVLLADDNREFTNLLAEYITEQEDMTVTGIAYNGEEVLQMLSEARKIPDVLILDIIMPH 63
           I + +A+D R     L   +  +EDMTV G A NGEE L  + +    PDV I+DI MP 
Sbjct: 2   IRLFIAEDQRMLLGALGSLLDLEEDMTVIGQALNGEEALHAILKLE--PDVCIMDIEMPV 59

Query: 64  LDGLGVLERLRDMDLKPEPKIIMLTAFGQENITQRAVQLGASYYILKPFDMEVLANRVRQ 123
             GL V E L  M      K+I+LT F +    +RAV+ GA  Y+LK  +++ LA+ +R+
Sbjct: 60  RSGLNVAEEL--MKKGCVSKVIILTTFARPGYFERAVKAGAHGYLLKDGEIDDLADAIRK 117

Query: 124 LV 125
            V
Sbjct: 118 CV 119


>AF1042 [T] COG0784 FOG: CheY-like receiver
          Length = 121

 Score = 75.9 bits (185), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 39/122 (31%), Positives = 71/122 (58%), Gaps = 5/122 (4%)

Query: 5   EVLLADDNREFTNLLAEYITEQEDMTVTGIAYNGEEVLQMLSEARKIPDVLILDIIMPHL 64
           +VL+ DD   F   L   I       + G A NG++ ++M  + +  PD++ +DI+MP +
Sbjct: 3   KVLIVDDT-AFMRKLLRNILFSGGFDIAGEAENGKQAVEMYKQLK--PDIVTMDIVMPEM 59

Query: 65  DGLGVLERLRDMDLKPEPKIIMLTAFGQENITQRAVQLGASYYILKPFDMEVLANRVRQL 124
           +G+  L+ ++ +D  P  K++M TA GQE + + A++LGA  YI+KPF    +   ++++
Sbjct: 60  NGIEALKAIKKID--PSAKVVMCTAVGQEQMVKAAIKLGAKGYIVKPFQAPKVIEELKKV 117

Query: 125 VG 126
            G
Sbjct: 118 AG 119


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.319    0.136    0.378 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 17,897,353
Number of extensions: 701561
Number of successful extensions: 2600
Number of sequences better than 1.0e-05: 297
Number of HSP's gapped: 2644
Number of HSP's successfully gapped: 297
Length of query: 271
Length of database: 38,378,431
Length adjustment: 105
Effective length of query: 166
Effective length of database: 26,268,361
Effective search space: 4360547926
Effective search space used: 4360547926
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 115 (48.9 bits)