BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0315.0007.p
         (300 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BS_ycbB_1 [T] COG0784 FOG: CheY-like receiver                         114   1e-25
BH2715_1 [T] COG0784 FOG: CheY-like receiver                          107   2e-23
CAC2218 [T] COG0784 FOG: CheY-like receiver                            71   2e-12
AF1042 [T] COG0784 FOG: CheY-like receiver                             68   2e-11
lin0699 [T] COG0784 FOG: CheY-like receiver                            67   5e-11

>BS_ycbB_1 [T] COG0784 FOG: CheY-like receiver
          Length = 615

 Score =  114 bits (286), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 8/137 (5%), Positives = 31/137 (22%), Gaps = 2/137 (1%)

Query: 3   LSFCIVDDDGAARRMLQHIIEDSGLGEVAGTAESG-QDGVRLILSENPDIVLMDLLMPDQ 61
           +   ++     +   L   +  + L                + +SE  + +         
Sbjct: 1   MLLNMMCGRQLSAISLCLAVTFAPLFNAQADEPEVIPGDSPVAVSEQGEALPQAQATAIM 60

Query: 62  DGIETIISLQSQGCRSKFVMISQIENGDMVSRAYRSGIEFFIRKPINKIEVESVLHKINE 121
            GI+ +    ++      +          V       +             ++V     +
Sbjct: 61  AGIQPLPEGAAE-KARTQIESQLPAGYKPVYLNQLQLLYAARDMQPMWENRDAVKAFQQQ 119

Query: 122 RYALGRYLDEIKLSLGK 138
              +     + + +   
Sbjct: 120 LAEVAIAGFQPQFNKWV 136


>BH2715_1 [T] COG0784 FOG: CheY-like receiver
          Length = 152

 Score =  107 bits (268), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 67/147 (45%), Positives = 94/147 (63%), Gaps = 6/147 (4%)

Query: 3   LSFCIVDDDGAARRMLQHIIEDSGLGEVAGTAESGQ--DGVRLILSENPDIVLMDLLMPD 60
           ++F I DDD   R +L  IIED  LG+V G AE G   DG RL + +  DI+L+DLLMP+
Sbjct: 1   MNFFITDDDVTVRSILAQIIEDEQLGQVVGEAEDGSELDGKRLNIKQ-VDILLIDLLMPN 59

Query: 61  QDGIETIISLQSQGCRSKFVMISQIENGDMVSRAYRSGIEFFIRKPINKIEVESVLHKIN 120
            DG+E I  ++ +  + K +MISQIE+ +++S AY  GIE +I KPINKIEV SV+ K+ 
Sbjct: 60  CDGLEAIQKIKPE-FKGKIIMISQIESKELISEAYLLGIEHYIMKPINKIEVLSVIRKVI 118

Query: 121 ERYALGRYLDEIKLSLGKLEGLQFGLP 147
               L + L +I+ SL  +  LQ  +P
Sbjct: 119 NHTRLEQSLYDIQKSLSNV--LQGSIP 143


>CAC2218 [T] COG0784 FOG: CheY-like receiver
          Length = 119

 Score = 71.2 bits (173), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 40/112 (35%), Positives = 61/112 (54%), Gaps = 1/112 (0%)

Query: 7   IVDDDGAARRMLQHIIEDSGLGEVAGTAESGQDGVRLILSENPDIVLMDLLMPDQDGIET 66
           IVDD    R M++ I+E +G  E+ G A +G   V +   E PD+V MD+ MPD DGIE 
Sbjct: 6   IVDDAAFMRMMIKDILEKNGF-EIVGEASNGLKAVEIYKKEKPDVVTMDITMPDMDGIEA 64

Query: 67  IISLQSQGCRSKFVMISQIENGDMVSRAYRSGIEFFIRKPINKIEVESVLHK 118
           + ++++    ++ +M S +    MV  A R+G   FI KP  +  V   + K
Sbjct: 65  VKAIKAFDPAARVIMCSAMGQQTMVMDAIRAGARDFIVKPFQQDRVLEAIKK 116


>AF1042 [T] COG0784 FOG: CheY-like receiver
          Length = 121

 Score = 67.8 bits (164), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 38/113 (33%), Positives = 64/113 (56%), Gaps = 1/113 (0%)

Query: 7   IVDDDGAARRMLQHIIEDSGLGEVAGTAESGQDGVRLILSENPDIVLMDLLMPDQDGIET 66
           IVDD    R++L++I+   G  ++AG AE+G+  V +     PDIV MD++MP+ +GIE 
Sbjct: 6   IVDDTAFMRKLLRNILFSGGF-DIAGEAENGKQAVEMYKQLKPDIVTMDIVMPEMNGIEA 64

Query: 67  IISLQSQGCRSKFVMISQIENGDMVSRAYRSGIEFFIRKPINKIEVESVLHKI 119
           + +++     +K VM + +    MV  A + G + +I KP    +V   L K+
Sbjct: 65  LKAIKKIDPSAKVVMCTAVGQEQMVKAAIKLGAKGYIVKPFQAPKVIEELKKV 117


>lin0699 [T] COG0784 FOG: CheY-like receiver
          Length = 119

 Score = 66.6 bits (161), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 40/116 (34%), Positives = 61/116 (52%), Gaps = 1/116 (0%)

Query: 3   LSFCIVDDDGAARRMLQHIIEDSGLGEVAGTAESGQDGVRLILSENPDIVLMDLLMPDQD 62
           L   IVDD    R M+++I++DS   EV   AE+G + V+      PDIV +D+ MP+ D
Sbjct: 2   LKLLIVDDAMFMRTMIKNIVKDSDF-EVVAEAENGLEAVKKYDEVKPDIVTLDITMPEMD 60

Query: 63  GIETIISLQSQGCRSKFVMISQIENGDMVSRAYRSGIEFFIRKPINKIEVESVLHK 118
           G+E +  + ++   +K +M S +    MV  A + G + FI KP     V   L K
Sbjct: 61  GLEALAQIMAKDPSAKVIMCSAMGQQGMVVDAIKKGAKDFIVKPFQADRVLEALEK 116


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.318    0.137    0.374 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 20,139,116
Number of extensions: 800021
Number of successful extensions: 3974
Number of sequences better than 1.0e-05: 138
Number of HSP's gapped: 4075
Number of HSP's successfully gapped: 138
Length of query: 300
Length of database: 38,378,431
Length adjustment: 106
Effective length of query: 194
Effective length of database: 26,153,027
Effective search space: 5073687238
Effective search space used: 5073687238
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 115 (48.9 bits)