BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0313.0001.p
         (318 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BH1534 [S] COG3832 Uncharacterized conserved protein                  117   3e-26
BH2086 [K] COG0640 Predicted transcriptional regulators                79   8e-15
MT0605_1 [K] COG0640 Predicted transcriptional regulators              65   1e-10
Rv0576_1 [K] COG0640 Predicted transcriptional regulators              64   5e-10
BS_yvbA [K] COG0640 Predicted transcriptional regulators               60   4e-09

>BH1534 [S] COG3832 Uncharacterized conserved protein
          Length = 138

 Score =  117 bits (292), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 63/137 (45%), Positives = 88/137 (64%), Gaps = 5/137 (3%)

Query: 109 LPEIRKTIVLNAPIDKVWKAVATSGGLAAWWMDNTFEPVLGQEFILRSGQFGDSPCKVTE 168
           LP+I+K +  NAPI+KVW+AV+TS GLA W+M+N  +   G  F L+S  FG SPC+VT+
Sbjct: 4   LPDIKKEVRFNAPIEKVWEAVSTSEGLAFWFMENDLKAETGHHFHLQS-PFGPSPCQVTD 62

Query: 169 LEPPYRLGFDWGKD-WHLAFELKELENQQTEFTLIHSGWDEA--KVTEFGQPHSVIRGIM 225
           +E P +L F W  D W + F LKE EN  T FT++HSGW +   KV + G   +V+   M
Sbjct: 63  VERPIKLSFTWDTDGWSVTFHLKEEEN-GTIFTIVHSGWKQGDTKVEKAGAESAVVHERM 121

Query: 226 NGGWEKIVNQSLVSYIE 242
           + GW  +VN+ L   +E
Sbjct: 122 DRGWHDLVNERLRQIVE 138


>BH2086 [K] COG0640 Predicted transcriptional regulators
          Length = 109

 Score = 79.3 bits (194), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 38/66 (57%), Positives = 53/66 (80%), Gaps = 1/66 (1%)

Query: 254 DVFQAIADPTRRTVLQLLARN-DMPIVAISENFALSRTAINKHLHILSDAGLVSSRRVGR 312
           DVF AIADPTRR +++LLA   + P+  ++ +F + RTA++KHL IL +AGLV+SR+VGR
Sbjct: 9   DVFDAIADPTRRELIRLLAEEAEKPLHELTAHFQMGRTAVSKHLAILKEAGLVTSRKVGR 68

Query: 313 ETRYRL 318
           ETR+RL
Sbjct: 69  ETRFRL 74


>MT0605_1 [K] COG0640 Predicted transcriptional regulators
          Length = 99

 Score = 65.5 bits (158), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 29/65 (44%), Positives = 48/65 (73%)

Query: 254 DVFQAIADPTRRTVLQLLARNDMPIVAISENFALSRTAINKHLHILSDAGLVSSRRVGRE 313
           D+ +  A+PTRR +LQLLA  +  +  ++  F ++R+AI++HL +L++AGLV++R+ GRE
Sbjct: 3   DMLEVAAEPTRRRLLQLLAPGERTVTQLASQFTVTRSAISQHLGMLAEAGLVTARKQGRE 62

Query: 314 TRYRL 318
             YRL
Sbjct: 63  RYYRL 67


>Rv0576_1 [K] COG0640 Predicted transcriptional regulators
          Length = 108

 Score = 63.5 bits (153), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 28/64 (43%), Positives = 47/64 (73%)

Query: 255 VFQAIADPTRRTVLQLLARNDMPIVAISENFALSRTAINKHLHILSDAGLVSSRRVGRET 314
           + +  A+PTRR +LQLLA  +  +  ++  F ++R+AI++HL +L++AGLV++R+ GRE 
Sbjct: 1   MLEVAAEPTRRRLLQLLAPGERTVTQLASQFTVTRSAISQHLGMLAEAGLVTARKQGRER 60

Query: 315 RYRL 318
            YRL
Sbjct: 61  YYRL 64


>BS_yvbA [K] COG0640 Predicted transcriptional regulators
          Length = 90

 Score = 60.1 bits (144), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 29/66 (43%), Positives = 44/66 (66%)

Query: 253 HDVFQAIADPTRRTVLQLLARNDMPIVAISENFALSRTAINKHLHILSDAGLVSSRRVGR 312
           ++VF+AI+DPTRR +L LL   DM    I+E+F +S+ +I+ HL+IL  A ++S  R G+
Sbjct: 2   NNVFKAISDPTRRKILDLLKGGDMTAGDIAEHFNISKPSISHHLNILKQAEVISDHRKGQ 61

Query: 313 ETRYRL 318
              Y L
Sbjct: 62  FIYYSL 67


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.332    0.143    0.467 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 21,123,491
Number of extensions: 823462
Number of successful extensions: 1696
Number of sequences better than 1.0e-05: 12
Number of HSP's gapped: 1711
Number of HSP's successfully gapped: 12
Length of query: 318
Length of database: 38,378,431
Length adjustment: 106
Effective length of query: 212
Effective length of database: 26,153,027
Effective search space: 5544441724
Effective search space used: 5544441724
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 116 (49.3 bits)