BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0311.0007.p
         (129 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CAC2828 [LR] COG0494 NTP pyrophosphohydrolases including oxidati...   112   1e-25
CC0833 [LR] COG0494 NTP pyrophosphohydrolases including oxidativ...    97   6e-21
STM1301 [LR] COG0494 NTP pyrophosphohydrolases including oxidati...    94   6e-20
PA4400_1 [LR] COG0494 NTP pyrophosphohydrolases including oxidat...    92   2e-19
SA2278 [LR] COG0494 NTP pyrophosphohydrolases including oxidativ...    91   6e-19

>CAC2828 [LR] COG0494 NTP pyrophosphohydrolases including oxidative damage
           repair enzymes
          Length = 673

 Score =  112 bits (280), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 6/126 (4%), Positives = 13/126 (10%)

Query: 1   VIEVAAAIIHNDEGCILIARRRQGKSQAGLWEFPGGKLEDGEDAPACLRRELMEEMGIAI 60
           +          +             S                          +     A 
Sbjct: 1   MRLNPGQQQAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAA 60

Query: 61  LPYAAFGVNEHDYDGFTIRLMAWEAEFLEGRITLSDHDAFRWVTAKELDGFAFAPADIPF 120
                              +++         I                D           
Sbjct: 61  REMKERVGQTLGRKEARGLMISTFHTLGLDIIKREYAALGMKANFSLFDDTDQLALLKEL 120

Query: 121 VNRLLE 126
              L+E
Sbjct: 121 TEGLIE 126


>CC0833 [LR] COG0494 NTP pyrophosphohydrolases including oxidative damage
           repair enzymes
          Length = 673

 Score = 97.1 bits (240), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 5/126 (3%), Positives = 19/126 (15%), Gaps = 2/126 (1%)

Query: 1   VIEVAAAIIHNDEGCILIARRRQGKSQAGLWEFPGGKLEDGEDAPACLRRELMEEMGIAI 60
             +  A         +L                   +    +           +      
Sbjct: 5   PGQQQAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMK 64

Query: 61  LP--YAAFGVNEHDYDGFTIRLMAWEAEFLEGRITLSDHDAFRWVTAKELDGFAFAPADI 118
                             T   +  +    E        +   +    +L         +
Sbjct: 65  ERVGQTLGRKEARGLMISTFHTLGLDIIKREYAALGMKANFSLFDDTDQLALLKELTEGL 124

Query: 119 PFVNRL 124
              +++
Sbjct: 125 IEDDKV 130


>STM1301 [LR] COG0494 NTP pyrophosphohydrolases including oxidative damage
           repair enzymes
          Length = 673

 Score = 93.6 bits (231), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 3/121 (2%), Positives = 16/121 (13%), Gaps = 1/121 (0%)

Query: 2   IEVAAAIIHNDEGCILIARRRQGKSQAGLWEFPGGKLEDGEDAPACLRRELMEEMGIAIL 61
                A+     G  L+           +       +         +            +
Sbjct: 5   PGQQQAVEFVT-GPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREM 63

Query: 62  PYAAFGVNEHDYDGFTIRLMAWEAEFLEGRITLSDHDAFRWVTAKELDGFAFAPADIPFV 121
                           +            +   +        +  +         ++   
Sbjct: 64  KERVGQTLGRKEARGLMISTFHTLGLDIIKREYAALGMKANFSLFDDTDQLALLKELTEG 123

Query: 122 N 122
            
Sbjct: 124 L 124


>PA4400_1 [LR] COG0494 NTP pyrophosphohydrolases including oxidative damage
           repair enzymes
          Length = 673

 Score = 91.7 bits (226), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 2/121 (1%), Positives = 15/121 (12%)

Query: 2   IEVAAAIIHNDEGCILIARRRQGKSQAGLWEFPGGKLEDGEDAPACLRRELMEEMGIAIL 61
                  +    G  L+           +       +         +            +
Sbjct: 4   NPGQQQAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREM 63

Query: 62  PYAAFGVNEHDYDGFTIRLMAWEAEFLEGRITLSDHDAFRWVTAKELDGFAFAPADIPFV 121
                           +            +   +        +  +         ++   
Sbjct: 64  KERVGQTLGRKEARGLMISTFHTLGLDIIKREYAALGMKANFSLFDDTDQLALLKELTEG 123

Query: 122 N 122
            
Sbjct: 124 L 124


>SA2278 [LR] COG0494 NTP pyrophosphohydrolases including oxidative damage
           repair enzymes
          Length = 673

 Score = 90.5 bits (223), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 2/125 (1%), Positives = 15/125 (12%), Gaps = 1/125 (0%)

Query: 1   VIEVAAAIIHNDEGCILIARRRQGKSQAGLWEFPGGKLEDGEDAPACLRRELMEEMGIAI 60
                 A+        L+           +       +         +            
Sbjct: 4   NPGQQQAVEFVTGP-CLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAARE 62

Query: 61  LPYAAFGVNEHDYDGFTIRLMAWEAEFLEGRITLSDHDAFRWVTAKELDGFAFAPADIPF 120
           +                +            +   +        +  +         ++  
Sbjct: 63  MKERVGQTLGRKEARGLMISTFHTLGLDIIKREYAALGMKANFSLFDDTDQLALLKELTE 122

Query: 121 VNRLL 125
                
Sbjct: 123 GLIED 127


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.324    0.142    0.443 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 10,493,145
Number of extensions: 415632
Number of successful extensions: 738
Number of sequences better than 1.0e-05: 45
Number of HSP's gapped: 742
Number of HSP's successfully gapped: 45
Length of query: 129
Length of database: 38,378,431
Length adjustment: 94
Effective length of query: 35
Effective length of database: 27,537,035
Effective search space: 963796225
Effective search space used: 963796225
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 109 (46.6 bits)