BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0308.0003.p
         (225 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

mll0243 [R] COG2085 Predicted dinucleotide-binding enzymes            137   1e-32
Cgl2780 [R] COG2085 Predicted dinucleotide-binding enzymes             49   7e-06

>mll0243 [R] COG2085 Predicted dinucleotide-binding enzymes
          Length = 231

 Score =  137 bits (346), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 72/196 (36%), Positives = 112/196 (57%), Gaps = 4/196 (2%)

Query: 5   GHDVKIADARGIERLEG--KKLTGTPVIVEDVIKNIDVLITSIPFHALPSI-RXXXXXXX 61
           GH+V I+++RG   L G   +       +E+ ++  DV++ ++P   +P + R       
Sbjct: 23  GHEVTISNSRGPGSLAGLSAETGARAAAIEEAVRGQDVVVVAVPTIKIPGLPRELFASTP 82

Query: 62  XXXXXXDTSNYYPQM-SGKIEEIENGMVESVWVSNHLGRPIIKAFNNFLAYTLEHHGTPE 120
                 DT+NYYPQ   G ++ IE+   ES WV  HLGRP++KAFN   A  L     P 
Sbjct: 83  ADVVVIDTTNYYPQQRDGHLDGIEDANTESEWVEQHLGRPVVKAFNTIEATHLLPGAKPA 142

Query: 121 GTHGRIAIAIAGDNLSHKQIIIGVANVLGFDAVDSGSLSDSWRQQPGTPAYCTELTKEEL 180
           G+  RIA+A+AGD+   K   + + + +GFDAVD+G++++SWRQQPG+P Y  +   + +
Sbjct: 143 GSADRIALAVAGDDARAKSKAMALIDGIGFDAVDAGTIAESWRQQPGSPGYLKDYGVKGV 202

Query: 181 AIALNQANKEKAPFLR 196
             AL +AN E+ P  R
Sbjct: 203 HSALAKANPERQPEWR 218


>Cgl2780 [R] COG2085 Predicted dinucleotide-binding enzymes
          Length = 208

 Score = 48.5 bits (114), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 45/191 (23%), Positives = 87/191 (45%), Gaps = 14/191 (7%)

Query: 2   VENGHDVKIADARGIER--LEGKKLT--GTPVIVEDVIKNIDVLITSIPFHALPSIRXXX 57
           V  G++VK+A +  +++  L  + L     P   +  +K+ D++  ++P H   S+    
Sbjct: 25  VAAGYEVKVAGSGAVDKIALTAEILMPGAVPSTADQAVKDADIVFLAVPLHKFRSVNPAT 84

Query: 58  XXXXXXXXXXDTSNYYPQMSGKIEEIENG--MVESVWVSNHLGRPIIKAFNNFLAYTLEH 115
                     DT N++  ++G++EEI+        +      G  ++K+FN+   + +E 
Sbjct: 85  LEGKIVI---DTMNHWVPVNGELEEIDQDPRSTSEIIAEFFAGSTMVKSFNHIGYHEIEQ 141

Query: 116 HGTPEGTHGRIAIAIAGDNLSHKQIIIGVANVLGFDAVDSGSLSDSWRQQPGTPAYCTEL 175
                GT GR AIA A D++     +  +    GF  ++ G+L +    +PG  A+   L
Sbjct: 142 DA---GT-GR-AIAYATDDVDAGAQVAQLIKSFGFVPLNIGALENGRILEPGQEAFGAHL 196

Query: 176 TKEELAIALNQ 186
            K+     +NQ
Sbjct: 197 NKDSRLELVNQ 207


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.315    0.134    0.381 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 16,452,950
Number of extensions: 694410
Number of successful extensions: 1169
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1169
Number of HSP's successfully gapped: 2
Length of query: 225
Length of database: 38,378,431
Length adjustment: 103
Effective length of query: 122
Effective length of database: 26,499,029
Effective search space: 3232881538
Effective search space used: 3232881538
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 114 (48.5 bits)