BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0308.0001.p
         (198 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

NMA2093 [R] COG0637 Predicted phosphatase/phosphohexomutase            52   5e-07

>NMA2093 [R] COG0637 Predicted phosphatase/phosphohexomutase
          Length = 346

 Score = 52.4 bits (124), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 10/93 (10%), Positives = 21/93 (22%), Gaps = 4/93 (4%)

Query: 19  LSNVEFMLLQMIAEYRQASGYDIMKLVEQRGYKEWANIGTTSIYVGLKKLSDKGWISPET 78
           +         +        G                     +  + L  +++   +    
Sbjct: 1   MQYHRIPHSSLEVS-TLGLGTMTFGEQNSEADAHAQLDYAVAQGINLIDVAEMYPVP--P 57

Query: 79  ADEKSGKGPTPTRFVLTEEGIRKLRNEILDSLS 111
             E  G   T     L + G R+    I   +S
Sbjct: 58  RPETQGLTETYVGNWLAKHGSREKL-IIASKVS 89


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.319    0.136    0.380 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 14,267,526
Number of extensions: 602492
Number of successful extensions: 2233
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2234
Number of HSP's successfully gapped: 1
Length of query: 198
Length of database: 38,378,431
Length adjustment: 101
Effective length of query: 97
Effective length of database: 26,729,697
Effective search space: 2592780609
Effective search space used: 2592780609
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 113 (48.1 bits)