BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0307.0085.p (284 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value lin0219 [G] COG0395 ABC-type sugar transport system, permease co... 202 4e-52 lin1843 [G] COG0395 ABC-type sugar transport system, permease co... 175 6e-44 SPy0255 [G] COG0395 ABC-type sugar transport system, permease co... 175 7e-44 BH1119 [G] COG0395 ABC-type sugar transport system, permease com... 164 1e-40 PH0755 [G] COG0395 ABC-type sugar transport system, permease com... 162 7e-40 >lin0219 [G] COG0395 ABC-type sugar transport system, permease component Length = 282 Score = 202 bits (514), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 108/269 (40%), Positives = 168/269 (62%), Gaps = 2/269 (0%) Query: 15 SNLILTILFALLSVFFLLPLIWMLSAAAKTERDVWTFPIQWIPKEWNLVSNFKEVWMGDV 74 N++ + L + L+P +WM+S A KT P Q+IPKE +NF +V+ Sbjct: 15 KNILTYTIICLGGIIMLMPFVWMISTAFKTGAANMVLPPQFIPKE-PTTANFTQVF-EMF 72 Query: 75 SFGLFYMNSIKLAVISTLATVIISSMAGYALSKLEFKGRGIVFSLMLAFMMIPEQATLVP 134 F MNS+ +AV++TL ++ SMA YA +++ F GR +F L LA MM+P Q T++P Sbjct: 73 PMLRFLMNSVVVAVVTTLGQMLFCSMAAYAFARIPFWGRDKLFLLYLATMMVPAQVTMIP 132 Query: 135 RYIMIKDFGLYDSHAALILMGMFSSYFAFLLKQFMAGIHNDLLEAAELDGAGFFRIYRSV 194 ++I++K FG DS+A LI+ +FS + FLL+Q GI +L EAA +DGA F I+R V Sbjct: 133 QFILMKQFGWLDSYAGLIVPALFSVFGTFLLRQAFMGIPKELEEAAFMDGANHFTIFRKV 192 Query: 195 MLPLCQPILVTVGIIKFIWTWNDYQGPLIMLNSTKLYTIPLGMQFFQEEFGTRISVMMMA 254 +LPL +P T+GI+ F+ +WN Y PLI+ +S ++ T+PLG+ Q +GT +MM Sbjct: 193 ILPLAKPTFATLGILTFMQSWNSYLWPLIVTSSQEMATLPLGLSLLQGRYGTNYGLMMAG 252 Query: 255 SVAAIIPLLVLFLALQKQVIEGIAIGGVK 283 + ++IP+L ++L QK I+G+A+ G+K Sbjct: 253 VLISVIPILAVYLFAQKYFIQGMAMSGMK 281 >lin1843 [G] COG0395 ABC-type sugar transport system, permease component Length = 276 Score = 175 bits (444), Expect = 6e-44, Method: Compositional matrix adjust. Identities = 86/255 (33%), Positives = 160/255 (62%), Gaps = 3/255 (1%) Query: 29 FFLLPLIWMLSAAAKTERDVWTFPIQWIPKEWNLVSNFKEVWMGDVSFGLFYMNSIKLAV 88 F +LP IWM+ ++ KT+ ++ P P+ + L NF +++ ++ F ++ N++ + Sbjct: 25 FMILPFIWMVLSSLKTDAEILKIPPTIWPETFTL-DNFTKLFT-EMDFAIYLKNTLIIVF 82 Query: 89 ISTLATVIISSMAGYALSKLEFKGRGIVFSLMLAFMMIPEQATLVPRYIMIKDFGLYDSH 148 S + +++MAGY +K +FKG+ +F L+LA MMIP Q T++P Y+++ GL ++ Sbjct: 83 FSFFG-LFLNAMAGYGFAKFKFKGKNKLFYLVLATMMIPGQVTMIPVYLLLNAAGLTNTM 141 Query: 149 AALILMGMFSSYFAFLLKQFMAGIHNDLLEAAELDGAGFFRIYRSVMLPLCQPILVTVGI 208 ++L G+ ++ FL +QFM+ I +DLLEAA LDGA F I+ +++P+ +P+L GI Sbjct: 142 TGIVLPGLVGAFGIFLFRQFMSTISDDLLEAARLDGASEFYIFWRIVIPISRPVLAVQGI 201 Query: 209 IKFIWTWNDYQGPLIMLNSTKLYTIPLGMQFFQEEFGTRISVMMMASVAAIIPLLVLFLA 268 + FI WN + PLI+ N K YT+ +G+Q + ++G+ ++ M + +IP++++F+ Sbjct: 202 LTFIAGWNSFLWPLIIANDEKFYTLSVGLQLLKGQYGSNYALQMAGATFMVIPIILIFMT 261 Query: 269 LQKQVIEGIAIGGVK 283 QK +++G + G+K Sbjct: 262 FQKYILKGFNVSGMK 276 >SPy0255 [G] COG0395 ABC-type sugar transport system, permease component Length = 276 Score = 175 bits (444), Expect = 7e-44, Method: Compositional matrix adjust. Identities = 96/278 (34%), Positives = 161/278 (57%), Gaps = 2/278 (0%) Query: 7 MSLKRIKTSNLILTILFALLSVFFLLPLIWMLSAAAKTERDVWTFPIQWIPKEWNLVSNF 66 M+ K++ S+++ T++ +L++ F+ P W+++ A K + D P QW PK + NF Sbjct: 1 MTKKKLTASDILTTVMLCVLTILFIFPFYWIMTGAFKAQADTIMIPPQWWPKA-PTIENF 59 Query: 67 KEVWMGDVSFGLFYMNSIKLAVISTLATVIISSMAGYALSKLEFKGRGIVFSLMLAFMMI 126 K + + + + + NS+ ++V + SS+AGYAL+K F G+ ++FS+ +A M + Sbjct: 60 KALVVQNPALKWLW-NSVFISVATMFLVCGTSSLAGYALAKKRFYGQRLLFSIFIAAMAL 118 Query: 127 PEQATLVPRYIMIKDFGLYDSHAALILMGMFSSYFAFLLKQFMAGIHNDLLEAAELDGAG 186 P+Q LVP ++ G++D+ AA+IL + + FL+KQF I +LLE+A++DG G Sbjct: 119 PKQVVLVPLVRIVNFMGIHDTLAAVILPLVGWPFGVFLMKQFSENIPTELLESAKIDGCG 178 Query: 187 FFRIYRSVMLPLCQPILVTVGIIKFIWTWNDYQGPLIMLNSTKLYTIPLGMQFFQEEFGT 246 R + +V P+ +P + I FI TWNDY L+ML S + TI LG+ Q E T Sbjct: 179 EIRTFFNVAFPIVKPGFAALAIFTFINTWNDYFMQLVMLTSRENLTISLGVATMQAEMAT 238 Query: 247 RISVMMMASVAAIIPLLVLFLALQKQVIEGIAIGGVKG 284 ++M + A +P++ +FL QK +GI +G VKG Sbjct: 239 NYGLIMAGAAMAAVPIVTVFLVFQKSFTQGITMGAVKG 276 >BH1119 [G] COG0395 ABC-type sugar transport system, permease component Length = 281 Score = 164 bits (415), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 93/285 (32%), Positives = 166/285 (58%), Gaps = 12/285 (4%) Query: 7 MSLKRIKTSNLI---LTILFALLSVFFLLPLIWMLSAAAKTERDVWTFPIQWIPKEWNLV 63 M KR +++I I F + V+ P++WM++++ K ++++ IP E+ + Sbjct: 1 MKTKRTWYADVIYYGFVIAFGFIMVY---PILWMVASSLKPASEIFSQASSLIPSEF-VW 56 Query: 64 SNFKEVW--MGDVSFGLFYMNSIKLAVISTLATVIISSMAGYALSKLEFKGRGIVFSLML 121 SN+ + W G F +++ NS + + ++ SS+ Y ++L+FK + ++F+ ++ Sbjct: 57 SNYPDGWAGFGRTGFDIYFKNSFIITTSVVIGAILSSSIVAYGFARLQFKFKKVLFACLI 116 Query: 122 AFMMIPEQATLVPRYIMIKDFGLYDSHAALILMGMF--SSYFAFLLKQFMAGIHNDLLEA 179 A +M+P Q TL+P+YI+ + G ++ LI+ + +F FLL QF+ GI +L EA Sbjct: 117 ATVMLPVQITLIPQYILFHNLGWVNTFYPLIVPAFLGGTPFFIFLLIQFIRGIPRELDEA 176 Query: 180 AELDGAGFFRIYRSVMLPLCQPILVTVGIIKFIWTWNDYQGPLIMLNSTKLYTIPLGMQ- 238 A +DG F ++ V+LPL +P LVTV I F+WTW+D+ PLI LN T + T+ LG++ Sbjct: 177 AIIDGCSTFGVFWRVILPLLKPALVTVAIFAFMWTWDDFLAPLIYLNKTDIQTVALGLRN 236 Query: 239 FFQEEFGTRISVMMMASVAAIIPLLVLFLALQKQVIEGIAIGGVK 283 F E GT ++ S +++P ++FL Q+ ++EGI+ G+K Sbjct: 237 FMDAESGTSWGALLAMSTLSLLPQFIIFLFFQRYLVEGISTTGLK 281 >PH0755 [G] COG0395 ABC-type sugar transport system, permease component Length = 279 Score = 162 bits (409), Expect = 7e-40, Method: Compositional matrix adjust. Identities = 102/283 (36%), Positives = 166/283 (58%), Gaps = 10/283 (3%) Query: 7 MSLKRIKTSNLILT----ILFALLSVFFLLPLIWMLSAAAKTERDVWTFPIQWIPKEWNL 62 +S K +K L+LT I+FAL+ +L+P I + A+ +P +WIP + L Sbjct: 2 ISEKTMKKLWLLLTYSVLIIFALV---YLMPFIRSIVASFMEWAQASKYPPEWIPHPFTL 58 Query: 63 VSNFKEVWMGDVSFGLFYMNSIKLAVISTLATVIISSMAGYALSKLEFKGRGIVFSLMLA 122 N+++++ ++ F + +N+ A I+ +I SSMAGYA ++L+F GR ++FS +L+ Sbjct: 59 -ENYRKLFRLEL-FPRWILNTSLYAGITVTGNIIFSSMAGYAFARLKFPGRDVIFSSLLS 116 Query: 123 FMMIPEQATLVPRYIMIKDFGLYDSHAALILMGMFSSYFAFLLKQFMAGIHNDLLEAAEL 182 +MIP TLVP YI+I GL D+ L L+ + S FL++Q+ + N++ EAA L Sbjct: 117 LLMIPMFVTLVPNYIIIYKLGLVDNIFGLSLLSLVSVSSIFLMRQYFTSLPNEIFEAARL 176 Query: 183 DGAGFFRIYRSVMLPLCQPILVTVGIIKFIWTWNDYQGPLIMLNSTKLYTIPLGMQF-FQ 241 DG G + + + LPL +P L V + +F+ WN + GPLI L S + +T+P+G+ F FQ Sbjct: 177 DGCGPIKSFFYIALPLAKPALGAVAVYQFLGAWNAFIGPLIFLRSPENFTLPVGLSFAFQ 236 Query: 242 EEFGTRISVMMMASVAAIIPLLVLFLALQKQVIEGIAIGGVKG 284 T + ++ S+ A P ++LF+AL K +I GI + G KG Sbjct: 237 RSMWTEYTPIIAGSIVAAAPTILLFVALNKYLIRGIVVTGGKG 279 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.330 0.142 0.430 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 18,858,354 Number of extensions: 706299 Number of successful extensions: 2793 Number of sequences better than 1.0e-05: 180 Number of HSP's gapped: 2588 Number of HSP's successfully gapped: 182 Length of query: 284 Length of database: 38,378,431 Length adjustment: 105 Effective length of query: 179 Effective length of database: 26,268,361 Effective search space: 4702036619 Effective search space used: 4702036619 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.9 bits) S2: 115 (48.9 bits)