BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0307.0072.p (217 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value CAC3429 [TK] COG2197 Response regulator containing a CheY-like r... 253 2e-67 BS_ydfI [TK] COG2197 Response regulator containing a CheY-like r... 248 4e-66 DR1558 [TK] COG2197 Response regulator containing a CheY-like re... 159 2e-39 DR0987 [TK] COG2197 Response regulator containing a CheY-like re... 155 6e-38 all4635 [TK] COG2197 Response regulator containing a CheY-like r... 151 9e-37 >CAC3429 [TK] COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Length = 217 Score = 253 bits (646), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 126/213 (59%), Positives = 167/213 (78%), Gaps = 2/213 (0%) Query: 5 KILIVDDHLVVREGLKLILETNEQFQVVGEAENGAEALPMIKELHPDVILMDLNMPVMGG 64 +IL+VDDH VVREGLKLI E ++++VVGEAENG +AL +I EL PDVILMDL+MP M G Sbjct: 5 RILVVDDHFVVREGLKLIFELEDEYEVVGEAENGEQALLLIDELKPDVILMDLSMPKMSG 64 Query: 65 LETMQELKKQGSSIPVIILTTYNEDDLMISGLAMGAKGYLLKDTSRENLFRNIESAVRGE 124 L+ ++ LK++ +SIP+IILTTYNED+L+ GL++GAKGYLLKDT+RE L R +ESA RGE Sbjct: 65 LDVLKALKEKENSIPIIILTTYNEDNLIKEGLSLGAKGYLLKDTTREELIRTVESAFRGE 124 Query: 125 TLLSADIMERVITARAQQKDSISPQNEAARLTDKETIILQAVARGFKSKVIAIDMGISER 184 LL ++ + + ++K+S + A +T++E ILQ++ARG KSK IA DMGISER Sbjct: 125 LLLQPEVSK--VLFNVKKKESTINTSFNASITERELFILQSIARGCKSKEIAFDMGISER 182 Query: 185 TVKAHLTAIYNKLGVDSRSQAVAVALERGILEM 217 TVKAHLT IY+KL V SRS+AVA A+E+GI+ + Sbjct: 183 TVKAHLTNIYSKLQVSSRSEAVAKAIEKGIIHV 215 >BS_ydfI [TK] COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Length = 486 Score = 248 bits (634), Expect = 4e-66, Method: Compositional matrix adjust. Identities = 13/211 (6%), Positives = 42/211 (19%), Gaps = 4/211 (1%) Query: 5 KILIVDDHLVVREGLKLILETNEQFQVVGEAENGAEALPMIKELHPDVILMDLNMPVMGG 64 L+ + L + I + ++GG Sbjct: 3 NNLLSAKATLPVYDLNNLAPRIVHLGFGAFHRAHQGVYADILATEHFSDWGYYEVNLIGG 62 Query: 65 LETMQELKKQGSSIPVIILTTYNEDDLMISGLAMGAKGYLLKDTSRENLFRNIESAVRGE 124 + + +L++Q + + + + + G+ A + Sbjct: 63 EQQIADLQQQDNL-YTVAEMSADVWTARVVGVVKKALHVQIDGLETVLAAMCEPQIAIVS 121 Query: 125 TLLSADIMERVITARAQQKDSISPQNEAARLTDKETIILQAVARGFKSKVIAIDMGISER 184 ++ A + + AA + + + Sbjct: 122 LTITEKGYFHS---PATGQLMLDHPMVAADVQNPHQPKTATGVIVEALARRKAAGLPAFT 178 Query: 185 TVKAHLTAIYNKLGVDSRSQAVAVALERGIL 215 + + D + + Sbjct: 179 VMSCDNMPENGHVMRDVVTSYAQAVDVKLAQ 209 >DR1558 [TK] COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Length = 225 Score = 159 bits (403), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 91/210 (43%), Positives = 133/210 (63%), Gaps = 7/210 (3%) Query: 5 KILIVDDHLVVREGLKLILETNEQFQVVGEAENGAEALPMIKELHPDVILMDLNMPVMGG 64 ++L+VDDH VVR+GL+L L +E +VVGEA NG EAL + L P+V++MDL MPVM G Sbjct: 15 RVLLVDDHAVVRQGLRLFLGLDEGIEVVGEAANGEEALQEAERLRPEVVVMDLMMPVMDG 74 Query: 65 LETMQELKKQGSSIPVIILTTYNEDDLMISGLAMGAKGYLLKDTSRENLFRNIESAVRGE 124 + +EL+++ VI LT+ E++ + + GA Y+LKD S + L I +A RGE Sbjct: 75 ITATRELRRRLPDTEVIALTSTLEENKVNGAIEAGAISYMLKDASSDTLADAIHAAARGE 134 Query: 125 TLLSADIMERVITARAQQKDSISPQNEAARLTDKETIILQAVARGFKSKVIAIDMGISER 184 L + R++ +D SP+ + LT KET +LQ +ARG +K IA + G+SE Sbjct: 135 VRLHPEAARRLV------RDFRSPEMRES-LTPKETAVLQLLARGQSNKDIAAEQGVSEA 187 Query: 185 TVKAHLTAIYNKLGVDSRSQAVAVALERGI 214 TVK H++ + +KLG+DSR+QA AL+ GI Sbjct: 188 TVKTHVSRLLSKLGLDSRTQAALYALKYGI 217 >DR0987 [TK] COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Length = 239 Score = 155 bits (391), Expect = 6e-38, Method: Compositional matrix adjust. Identities = 83/211 (39%), Positives = 132/211 (62%), Gaps = 3/211 (1%) Query: 6 ILIVDDHLVVREGLKLILETNEQFQVVGEAENGAEALPMIKELHPDVILMDLNMPVMGGL 65 +L+VDDH VVR+G + +LE +VVGEA +G EAL + L PDVILMD++MP M G+ Sbjct: 28 LLLVDDHPVVRKGTRELLEGETDLRVVGEAGSGEEALAQARSLTPDVILMDVSMPGMNGI 87 Query: 66 ETMQELKKQGSSIPVIILTTYNEDDLMISGLAMGAKGYLLKDTSRENLFRNIESAVRGET 125 E + +K + S+ V++LT+Y++D + + L GA GYLLK+ S ++L + + GE+ Sbjct: 88 EATKAIKAEQPSVGVLVLTSYDDDAYVFALLEAGAAGYLLKNASEDDLLGAVRAVAAGES 147 Query: 126 LLSADIMERVITARAQQKDSISPQNEAARLTDKETIILQAVARGFKSKVIAIDMGISERT 185 L I +V+ + P+++ L+ +E +L+ A G +K IA D+ IS RT Sbjct: 148 ALHPSIARKVLERFSVASTPTPPEDD---LSPRELEVLRVAASGRTNKEIARDLDISPRT 204 Query: 186 VKAHLTAIYNKLGVDSRSQAVAVALERGILE 216 V+ HL I++KLGV SR++AV ++RG ++ Sbjct: 205 VQVHLANIFSKLGVGSRTEAVLHGIKRGWID 235 >all4635 [TK] COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Length = 219 Score = 151 bits (381), Expect = 9e-37, Method: Compositional matrix adjust. Identities = 79/206 (38%), Positives = 128/206 (62%), Gaps = 1/206 (0%) Query: 5 KILIVDDHLVVREGLKLILETNEQFQVVGEAENGAEALPMIKELHPDVILMDLNMPVMGG 64 K+L+VDD ++R+GL+ +LE ++VGEAENG A+ +I + HPDV+LMD+ MP+M G Sbjct: 3 KVLLVDDQNLIRQGLRALLELEPDIEIVGEAENGKIAIDLIPQFHPDVVLMDMRMPIMDG 62 Query: 65 LETMQELKKQGSSIPVIILTTYNEDDLMISGLAMGAKGYLLKDTSRENLFRNIESAVRGE 124 + QE+++ ++ V++LTT+++D+ + + L GA GYLLKDT E L I + +G Sbjct: 63 VAATQEIQQNFPNVKVLVLTTFDDDEYVKAALQHGAMGYLLKDTPSEELAVAIRAVEKGY 122 Query: 125 TLLSADIMERVITARAQQKDSISP-QNEAARLTDKETIILQAVARGFKSKVIAIDMGISE 183 T L I+++++ + P A LT +E +L+ +A G ++ IA + ISE Sbjct: 123 TQLGPGIVKKLLVQFQSTPNHTPPAPTHLADLTPREKEVLRLIAAGANNREIAQQLYISE 182 Query: 184 RTVKAHLTAIYNKLGVDSRSQAVAVA 209 TVK H+T I N+L + R+QA +A Sbjct: 183 GTVKNHVTNILNRLNLRDRTQAAIIA 208 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.317 0.134 0.352 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 14,408,293 Number of extensions: 531190 Number of successful extensions: 2453 Number of sequences better than 1.0e-05: 541 Number of HSP's gapped: 2217 Number of HSP's successfully gapped: 541 Length of query: 217 Length of database: 38,378,431 Length adjustment: 102 Effective length of query: 115 Effective length of database: 26,614,363 Effective search space: 3060651745 Effective search space used: 3060651745 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 113 (48.1 bits)