BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0307.0057.p
         (550 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CAC0406 [T] COG1716 FOG: FHA domain                                    67   6e-11
CAC0036 [T] COG1716 FOG: FHA domain                                    59   2e-08

>CAC0406 [T] COG1716 FOG: FHA domain
          Length = 516

 Score = 67.4 bits (163), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 35/98 (35%), Positives = 51/98 (52%), Gaps = 3/98 (3%)

Query: 451 PYLERVHENEGGLPEKIELNRPSFLIGRSPDVAQYVEKSEGVSRVHAEILKSGGGYILKD 510
           PYL    EN+ G+ EKI +N+  F IGR      YV  +  + ++HAEI K    Y L D
Sbjct: 420 PYL---LENKKGVVEKIFINKDIFKIGRLTGSVDYVSDNRAIGKMHAEIRKINSEYYLMD 476

Query: 511 LDSRNGTLFQGKAMIPYKEYPLTEGAVFTIVKGCYTFR 548
           LDS+NGT    + +   + Y ++E  +       YTF+
Sbjct: 477 LDSKNGTFINDRRLESNELYKISENDILKFANSYYTFK 514


>CAC0036 [T] COG1716 FOG: FHA domain
          Length = 468

 Score = 59.3 bits (142), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 31/88 (35%), Positives = 45/88 (51%)

Query: 460 EGGLPEKIELNRPSFLIGRSPDVAQYVEKSEGVSRVHAEILKSGGGYILKDLDSRNGTLF 519
           + G  E+I +N+ SF IGR    A Y+  ++ V ++HAEI K    Y L DL SRNGT  
Sbjct: 378 KAGTVERIFINKDSFKIGRISGQADYISDNKAVGKLHAEIRKQNEKYYLIDLTSRNGTFV 437

Query: 520 QGKAMIPYKEYPLTEGAVFTIVKGCYTF 547
            G+ +   + Y +  G         +TF
Sbjct: 438 NGQKINSDELYEIRNGDTIMFANSEFTF 465



 Score = 55.8 bits (133), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 40/163 (24%), Positives = 79/163 (48%), Gaps = 6/163 (3%)

Query: 33  QARMLMNIGIPHHLRLQLKEINLQVTLDYALSRRKMLSHLLKGDKLGMPDFFGLLLQIAV 92
           +  M+ N      L +++++ N ++ + Y  + R  +   LKG  +   +F  +L  IAV
Sbjct: 33  EVEMINNNPTSGALNIEIRQFNDKIKVLYDATGRIPIKEYLKGRTIRKSEFITILKNIAV 92

Query: 93  GMEEGRLYMLSAEQYVLHEDYIFIDGPLRSGKVYLTYLPL----QAEFSVNAGEGLKSLI 148
            + E + Y L  +++++  + IFI    +   V L YLP     + + +V     +KSLI
Sbjct: 93  CLLECKNYFLDEKKFLMDLETIFISE--KDFSVNLLYLPFELITEEDINVTYRNLVKSLI 150

Query: 149 MALMASVKELSGDGVQRLLQYCGEEEFTPAGLKELLAELLTDG 191
           +  ++  ++ S + +Q  L+Y  +++F   G K  L    T G
Sbjct: 151 IDFVSIEEKTSENIIQETLKYLRKDDFNLVGFKNYLESSETSG 193


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.317    0.136    0.399 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 40,505,428
Number of extensions: 1681901
Number of successful extensions: 3300
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3305
Number of HSP's successfully gapped: 3
Length of query: 550
Length of database: 38,378,431
Length adjustment: 111
Effective length of query: 439
Effective length of database: 25,576,357
Effective search space: 11228020723
Effective search space used: 11228020723
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 118 (50.1 bits)