BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0307.0030.p
         (193 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CC0732 [K] COG1309 Transcriptional regulator                           67   1e-11
RSc0012 [K] COG1309 Transcriptional regulator                          56   3e-08
sll1392 [K] COG1309 Transcriptional regulator                          55   5e-08
Cgl1504 [K] COG1309 Transcriptional regulator                          55   7e-08
aq_1058 [K] COG1309 Transcriptional regulator                          55   9e-08

>CC0732 [K] COG1309 Transcriptional regulator
          Length = 215

 Score = 67.4 bits (163), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 37/124 (29%), Positives = 68/124 (54%), Gaps = 7/124 (5%)

Query: 1   MARRAVEQELSRERILEAARHLFITKGYRAISMRSIGQHLGYSHGSLYYHFKEKAELFYA 60
           + RRA+ ++ +RER+L AAR LF  +GY   ++R I Q  G S G+++  F +K+ELF  
Sbjct: 18  LTRRALAKQRTRERVLAAARRLFSERGYEGATIRDIAQAAGMSTGAVFASFADKSELFEE 77

Query: 61  IVVEDFNHVATLLNQVMHTPPEPGMTRVEQLILEFIRFGLDHPYQYEIMFMIRDEELLAY 120
           I+  D+  +   + Q   T        V++ +L    FG+ + +  E + ++R    +++
Sbjct: 78  ILTADYEVIYAQMIQAARTAKT-----VDEALLGL--FGVAYSFHVEQLPLLRASISVSW 130

Query: 121 CRAE 124
            R+E
Sbjct: 131 TRSE 134


>RSc0012 [K] COG1309 Transcriptional regulator
          Length = 219

 Score = 56.2 bits (134), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 35/113 (30%), Positives = 59/113 (52%), Gaps = 3/113 (2%)

Query: 1   MARRAVEQEL-SRERILEAARHLFITKGYRAISMRSIGQHLGYSHGSLYYHFKEKAELFY 59
           M RR  E+ L +R RIL+AA  +F  +G    S+  I Q  G + G++Y+HF+ KA++F 
Sbjct: 1   MVRRTKEEALETRNRILDAAEEVFYVRGVARTSLSDIAQAAGVTRGAIYWHFRNKADVFA 60

Query: 60  AIVVEDFNHVATLLNQVMHTPPEP--GMTRVEQLILEFIRFGLDHPYQYEIMF 110
           A+       + TL + +   P +P   +  V   +L+ +   +     +EIMF
Sbjct: 61  AMCERVKLPMETLCSPLGVEPNDPLGELRNVANFVLQQLVEDMHWRRVFEIMF 113


>sll1392 [K] COG1309 Transcriptional regulator
          Length = 203

 Score = 55.5 bits (132), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 31/90 (34%), Positives = 47/90 (52%), Gaps = 4/90 (4%)

Query: 4  RAVEQELSRERILEAARHLFITKGYRAISMRSIGQHLGYSHGSLYYHFKEKAELFYAIVV 63
          +A +   +R  IL+ ARHLF TKGY A     I   L  + G+LY+ F +K  LF A++V
Sbjct: 13 KAEQTRRTRRAILDRARHLFATKGYAATGTEEIISELAITRGALYHQFGDKRGLFKAVIV 72

Query: 64 EDFNHVATLLNQVMHTPPEPGMTRVEQLIL 93
          E +  +       + T  +P     +QLI+
Sbjct: 73 EAYEEI----TDYIQTKVQPLDNNWQQLIV 98


>Cgl1504 [K] COG1309 Transcriptional regulator
          Length = 188

 Score = 55.1 bits (131), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 30/99 (30%), Positives = 51/99 (51%), Gaps = 14/99 (14%)

Query: 11  SRERILEAARHLFITKGYRAISMRSIGQHLGYSHGSLYYHFKEKAELFYAIVVEDFNHVA 70
           SR+ ILE AR  F   GY   ++R + +  G S G++++HF +K  LF A+  ED   +A
Sbjct: 12  SRQEILEGARRCFAEHGYEGATVRRLEEATGKSRGAIFHHFGDKENLFLALAREDAARMA 71

Query: 71  TLLNQVMHTPPEPGMTRVEQLILEFIRFGLDHPYQYEIM 109
            +++              E  ++E +R  L+ P +Y+ M
Sbjct: 72  EVVS--------------ENGLVEVMRGMLEDPERYDWM 96


>aq_1058 [K] COG1309 Transcriptional regulator
          Length = 179

 Score = 54.7 bits (130), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 25/72 (34%), Positives = 38/72 (52%)

Query: 11 SRERILEAARHLFITKGYRAISMRSIGQHLGYSHGSLYYHFKEKAELFYAIVVEDFNHVA 70
          ++ERILE ++ LF  KGY+  S+  I +    S G+ Y+HFK K EL   I+      + 
Sbjct: 3  TKERILEVSKELFFEKGYQGTSVEEIVKRANLSKGAFYFHFKSKEELITEIIERTHKKII 62

Query: 71 TLLNQVMHTPPE 82
          +L  +     PE
Sbjct: 63 SLFEENKEKTPE 74


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.326    0.139    0.407 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 13,337,251
Number of extensions: 549898
Number of successful extensions: 1180
Number of sequences better than 1.0e-05: 15
Number of HSP's gapped: 1187
Number of HSP's successfully gapped: 15
Length of query: 193
Length of database: 38,378,431
Length adjustment: 101
Effective length of query: 92
Effective length of database: 26,729,697
Effective search space: 2459132124
Effective search space used: 2459132124
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 113 (48.1 bits)