BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0307.0027.p (265 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AGc1505 [P] COG4208 ABC-type sulfate transport system, permease ... 174 2e-43 AGl2654 [P] COG4208 ABC-type sulfate transport system, permease ... 162 5e-40 BMEI0674 [O] COG0555 ABC-type sulfate transport system, permease... 151 1e-36 BMEI0675 [P] COG4208 ABC-type sulfate transport system, permease... 150 1e-36 BMEI1839 [P] COG4208 ABC-type sulfate transport system, permease... 148 1e-35 >AGc1505 [P] COG4208 ABC-type sulfate transport system, permease component Length = 370 Score = 174 bits (440), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 14/241 (5%), Positives = 33/241 (13%), Gaps = 7/241 (2%) Query: 12 VFFLLIAA----PLGKMTIGAFSEGFDGFWNALTRPEALHALMMTGFXXXXXTLLNTLFG 67 + +L P +G + R + F Sbjct: 30 MATILSHLRNAKPYRTGALGITAAELVSLLELAERGQVNSPEQARQFFETNSVPFRISPA 89 Query: 68 IMMALYLVRASWLGSRVKGLLNSIVDLPYAVSPXXXXXXXXXXXXPESALGAVFEQIGLK 127 + ++ + + D+ G Sbjct: 90 QGKSGFVTAFYEPE---LEVSATPDDVWRYPIYRRPPELVDIDNDNRPDGFDPSYAFGKA 146 Query: 128 IVYAFPGMVIATLFVTFPLMVREIMPVLQEIGSQQEEAASTLGAYGWTTFWKVTWPSIRW 187 L R + A + + Sbjct: 147 DEEGISYFPDRRAIDEGCLRGRGLEIAWARSKVDLFFVHVQGAARLVFPDGAIKRITYAA 206 Query: 188 AVIYGVILTVARSLGEFGAVLVVSGNIMNKTQTATTLVYQDVENFNVTAAGGIALVLAAF 247 + L + A D ++ + A Sbjct: 207 KAGHVFSPIGRLLLDRGELDPKTISMQTIRQWLADHPDEVDGVLWHNRSYIFFREADVAG 266 Query: 248 S 248 Sbjct: 267 L 267 >AGl2654 [P] COG4208 ABC-type sulfate transport system, permease component Length = 154 Score = 162 bits (410), Expect = 5e-40, Method: Compositional matrix adjust. Identities = 0/248 (0%), Positives = 0/248 (0%), Gaps = 6/248 (2%) Query: 1 MRKLWIGLTYLVFFLLIAAPLGKMTIGAFSEGFDGFWNALTRPEALHALMMTGFXXXXXT 60 + + L + AL Sbjct: 19 SSGSQTANRTELPETIREFFLLLNNRQIDALPQLLAPGALIVDGKGRGDTNASPRERLND 78 Query: 61 LLNTLFGIMMALYLVRASWLGSRVKGLLNSIVDLPYAVSPXXXXXXXXXXXXPESALGAV 120 L+ L ++ L + S + Sbjct: 79 TLSFLRSPVVVLRSEPLFEGCRV---TVVSPSGSDLRYYKLNFQMISGKIVLLKILPAKP 135 Query: 121 FEQIGLKIVYAFPGMVIATLFVTFPLMVREIMPVLQEIGSQQEEAASTLGAYGWTTFWKV 180 Sbjct: 136 195 Query: 181 TWPSIRWAVIYGVILTVARSLGEFGAVLVVSGNIMNKTQT---ATTLVYQDVENFNVTAA 237 Sbjct: 196 255 Query: 238 GGIALVLA 245 Sbjct: 256 263 >BMEI0674 [O] COG0555 ABC-type sulfate transport system, permease component Length = 298 Score = 151 bits (381), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 88/259 (33%), Positives = 143/259 (55%), Gaps = 3/259 (1%) Query: 4 LWIGLTYLVFFLLIAAPLGKMTIGAFSEGFDGFWNALTRPEALHALMMTGFXXXXXTLLN 63 L +G T + +++A PL M + S G+ FWN +T AL +T T+LN Sbjct: 37 LTLGCTLVYLTVIVALPLLAMILKTASLGWGDFWNIVTSERALATYRITVSAAAVATILN 96 Query: 64 TLFGIMMALYLVRASWLGSRVKGLLNSIVDLPYAVSPXXXXXXXXXXXXPESALGAVFEQ 123 LFG+++A L R + G R L+++ VDLP+A+ G V E Sbjct: 97 GLFGLLLAWVLTRYDFPGKR---LIDAAVDLPFALPTAIAGLALVTLFAQNGWFGRVLEP 153 Query: 124 IGLKIVYAFPGMVIATLFVTFPLMVREIMPVLQEIGSQQEEAASTLGAYGWTTFWKVTWP 183 +G+K+ YA G++IA F + P +VR + PVL+++ + EEAA +LGA W TF +TWP Sbjct: 154 LGIKVAYAPLGIMIAMFFTSIPFVVRTVQPVLEDMSADVEEAARSLGATSWQTFTHITWP 213 Query: 184 SIRWAVIYGVILTVARSLGEFGAVLVVSGNIMNKTQTATTLVYQDVENFNVTAAGGIALV 243 +I A + G L+ ARSLGEFG+++ +SGN+ +T+ LV+ ++ ++ AA +A V Sbjct: 214 TIFPAFLAGASLSFARSLGEFGSIVFISGNLPFQTEVTALLVFIRLDEYDYPAAAALAFV 273 Query: 244 LAAFSAGLLLLMEWSKRRK 262 + + +LL+ + R+ Sbjct: 274 MLVMAFFMLLVTNLIQARR 292 >BMEI0675 [P] COG4208 ABC-type sulfate transport system, permease component Length = 276 Score = 150 bits (380), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 89/249 (35%), Positives = 138/249 (55%), Gaps = 3/249 (1%) Query: 15 LLIAAPLGKMTIGAFSEGFDGFWNALTRPEALHALMMTGFXXXXXTLLNTLFGIMMALYL 74 L I APL + AFS+G F++ + +P+ LHA+ +T +N FG+ +A + Sbjct: 30 LCIGAPLAVIFSYAFSKGIHVFFSEILKPDTLHAVWLTVLTAIVVVPINMAFGVCVAWLV 89 Query: 75 VRASWLGSRVKGLLNSIVDLPYAVSPXXXXXXXXXXXXPESALGAVFEQIGLKIVYAFPG 134 + + G R LL + V++P++VSP + LG E +KI++ P Sbjct: 90 TKFRFPGRR---LLITFVEIPFSVSPIVAGVTYLFLYGSQGLLGPFLEAHDIKIMFTVPA 146 Query: 135 MVIATLFVTFPLMVREIMPVLQEIGSQQEEAASTLGAYGWTTFWKVTWPSIRWAVIYGVI 194 + + +LFVT P + RE++P+++ GS +EEAA TLGA W TF+ VT P+I+WA++YG + Sbjct: 147 IFLVSLFVTSPFVARELIPLMEVQGSDEEEAALTLGASAWQTFFYVTLPNIKWALLYGAV 206 Query: 195 LTVARSLGEFGAVLVVSGNIMNKTQTATTLVYQDVENFNVTAAGGIALVLAAFSAGLLLL 254 L AR +GEFGA VVSG I KT T V ++NV A A LA + L+L Sbjct: 207 LCNARVMGEFGATSVVSGAIRGKTNTLPLQVELLFNDYNVAGAFAAASTLALIALVTLVL 266 Query: 255 MEWSKRRKE 263 + +R++ Sbjct: 267 KVFLERKQH 275 >BMEI1839 [P] COG4208 ABC-type sulfate transport system, permease component Length = 245 Score = 148 bits (373), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 84/210 (40%), Positives = 122/210 (58%), Gaps = 3/210 (1%) Query: 28 AFSEGFDGFWNALTRPEALHALMMTGFXXXXXTLLNTLFGIMMALYLVRASWLGSRVKGL 87 AF +G + AL P+A A+ +T LN +FGI A + + + G K L Sbjct: 3 AFRKGMSEYIAALVEPDAWAAIKLTLTVAAIAVPLNVVFGIAAAWAIAKFEFKG---KAL 59 Query: 88 LNSIVDLPYAVSPXXXXXXXXXXXXPESALGAVFEQIGLKIVYAFPGMVIATLFVTFPLM 147 L +++DLP++VSP S LG + G++I++A PG+V+AT+FVTFP + Sbjct: 60 LTTLIDLPFSVSPVISGLVFVLLFSSHSLLGPWLSRHGIEILFAVPGIVLATVFVTFPFV 119 Query: 148 VREIMPVLQEIGSQQEEAASTLGAYGWTTFWKVTWPSIRWAVIYGVILTVARSLGEFGAV 207 RE++P++QE G+ EEAA +LGA GW F VT P+I+W ++YGV+L AR++GEFGAV Sbjct: 120 ARELIPLMQEQGTGDEEAAISLGASGWQAFRYVTLPNIKWGLLYGVLLCNARAMGEFGAV 179 Query: 208 LVVSGNIMNKTQTATTLVYQDVENFNVTAA 237 VVSG+I T T V +N A Sbjct: 180 SVVSGHIRGLTNTMPLHVEILYNEYNFVGA 209 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.326 0.139 0.424 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 17,400,668 Number of extensions: 635429 Number of successful extensions: 2272 Number of sequences better than 1.0e-05: 62 Number of HSP's gapped: 2264 Number of HSP's successfully gapped: 65 Length of query: 265 Length of database: 38,378,431 Length adjustment: 104 Effective length of query: 161 Effective length of database: 26,383,695 Effective search space: 4247774895 Effective search space used: 4247774895 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 115 (48.9 bits)