BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0307.0015.p (239 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BH1279 [F] COG0775 Nucleoside phosphorylase 188 8e-48 STM0207 [F] COG0775 Nucleoside phosphorylase 172 6e-43 pfs [F] COG0775 Nucleoside phosphorylase 160 1e-39 Zpfs [F] COG0775 Nucleoside phosphorylase 160 1e-39 >BH1279 [F] COG0775 Nucleoside phosphorylase Length = 231 Score = 188 bits (477), Expect = 8e-48, Method: Compositional matrix adjust. Identities = 104/229 (45%), Positives = 146/229 (63%), Gaps = 4/229 (1%) Query: 3 IAVIGAMEEEVAPLLPKLRDVRSLKAGGGKLYAGVLDGQEVVLLQSGIGKVNAAVTTTLL 62 I +IGAM+EEV L KL + + Y G ++G+E+VLL+SGIGKVNAA+ TTLL Sbjct: 4 IGIIGAMDEEVELLKSKLSNCSERTIAECEFYTGTIEGKEIVLLKSGIGKVNAAIGTTLL 63 Query: 63 LERFHCELIINTGAAGGLAADLKVGDVVIAEELVYSDVDATAFSYAFGQVPQMPQRYPVA 122 ++ F IINTG+AGGL + L VGD+ I+ E+ Y+DVDAT F Y FGQVPQMP Y Sbjct: 64 IQLFQPTAIINTGSAGGLDSSLHVGDLAISTEVRYNDVDATVFGYEFGQVPQMPAFYQPD 123 Query: 123 AGLLAQARKLVRR-GVRQEQIVTGLITTADSFISDPERAVSIVSRFPEAKATDMEGAAIA 181 L+ A + + G+ ++ GLI + DSF+SD + RF ++ME AIA Sbjct: 124 DMLIDIAIEAAKTVGIPSKK---GLILSGDSFMSDAALVEQLKRRFNYPLCSEMEAGAIA 180 Query: 182 QTAYQFGVPFLAVRAISDIAGSDAAGLFKSHLELAAANSAEVVLEILSQ 230 Q ++FGVPF+ +R++SDIAG++A + LE A+ NSA +VL I+ + Sbjct: 181 QVCHRFGVPFVIIRSLSDIAGAEAKVSYDEFLETASVNSANLVLAIVGR 229 >STM0207 [F] COG0775 Nucleoside phosphorylase Length = 232 Score = 172 bits (435), Expect = 6e-43, Method: Compositional matrix adjust. Identities = 103/230 (44%), Positives = 140/230 (60%), Gaps = 3/230 (1%) Query: 1 MSIAVIGAMEEEVAPLLPKLRDVRSLKAGGGKLYAGVLDGQEVVLLQSGIGKVNAAVTTT 60 M I +IGAMEEEV L K+ + +++ GG ++Y G L+G EV LL+SGIGKV AA+ T Sbjct: 1 MKIGIIGAMEEEVTLLRDKIDNRQTITLGGCEIYTGQLNGTEVALLKSGIGKVAAALGAT 60 Query: 61 LLLERFHCELIINTGAAGGLAADLKVGDVVIAEELVYSDVDATAFSYAFGQVPQMPQRYP 120 LLLE ++IINTG+AGGLA+ LKVGD+V+++E Y D D TAF Y +GQ+P P + Sbjct: 61 LLLEHCKPDVIINTGSAGGLASTLKVGDIVVSDEARYHDADVTAFGYEYGQLPGCPAGFK 120 Query: 121 VAAGLLAQARKLVRRGVRQEQIVTGLITTADSFISDPERAVSIVSRFPEAKATDMEGAAI 180 L+A A +R V GLI + D+FI+ I FP+A A +ME AI Sbjct: 121 ADDKLIAAAESCIRE--LNLNAVRGLIVSGDAFINGSVGLAKIRHNFPDAVAVEMEATAI 178 Query: 181 AQTAYQFGVPFLAVRAISDIAGSDAAGLFKSHLELAAANSAEVVLEILSQ 230 A + F VPF+ VRAISD+A + F L +AA S +++E L Q Sbjct: 179 AHVCHNFNVPFVVVRAISDVADQQSHLSFDEFLAVAAKQST-LMVETLVQ 227 >pfs [F] COG0775 Nucleoside phosphorylase Length = 232 Score = 160 bits (405), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 100/228 (43%), Positives = 134/228 (58%), Gaps = 10/228 (4%) Query: 1 MSIAVIGAMEEEVAPLLPKLRDVRSLKAGGGKLYAGVLDGQEVVLLQSGIGKVNAAVTTT 60 M I +IGAMEEEV L K+ + +++ GG ++Y G L+G EV LL+SGIGKV AA+ T Sbjct: 1 MKIGIIGAMEEEVTLLRDKIENRQTISLGGCEIYTGQLNGTEVALLKSGIGKVAAALGAT 60 Query: 61 LLLERFHCELIINTGAAGGLAADLKVGDVVIAEELVYSDVDATAFSYAFGQVPQMPQRYP 120 LLLE ++IINTG+AGGLA LKVGD+V+++E Y D D TAF Y +GQ+P P Sbjct: 61 LLLEHCKPDVIINTGSAGGLAPTLKVGDIVVSDEARYHDADVTAFGYEYGQLPGCP---- 116 Query: 121 VAAGLLAQARKLVRRGVRQE----QIVTGLITTADSFISDPERAVSIVSRFPEAKATDME 176 AG A + + V GLI + D+FI+ I FP+A A +ME Sbjct: 117 --AGFKADDKLIAAAEACIAELNLNAVRGLIVSGDAFINGSVGLAKIRHNFPQAIAVEME 174 Query: 177 GAAIAQTAYQFGVPFLAVRAISDIAGSDAAGLFKSHLELAAANSAEVV 224 AIA + F VPF+ VRAISD+A + F L +AA S+ +V Sbjct: 175 ATAIAHVCHNFNVPFVVVRAISDVADQQSHLSFDEFLAVAAKQSSLMV 222 >Zpfs [F] COG0775 Nucleoside phosphorylase Length = 232 Score = 160 bits (405), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 100/228 (43%), Positives = 134/228 (58%), Gaps = 10/228 (4%) Query: 1 MSIAVIGAMEEEVAPLLPKLRDVRSLKAGGGKLYAGVLDGQEVVLLQSGIGKVNAAVTTT 60 M I +IGAMEEEV L K+ + +++ GG ++Y G L+G EV LL+SGIGKV AA+ T Sbjct: 1 MKIGIIGAMEEEVTLLRDKIENRQTISLGGCEIYTGQLNGTEVALLKSGIGKVAAALGAT 60 Query: 61 LLLERFHCELIINTGAAGGLAADLKVGDVVIAEELVYSDVDATAFSYAFGQVPQMPQRYP 120 LLLE ++IINTG+AGGLA LKVGD+V+++E Y D D TAF Y +GQ+P P Sbjct: 61 LLLEHCKPDVIINTGSAGGLAPTLKVGDIVVSDEARYHDADVTAFGYEYGQLPGCP---- 116 Query: 121 VAAGLLAQARKLVRRGVRQE----QIVTGLITTADSFISDPERAVSIVSRFPEAKATDME 176 AG A + + V GLI + D+FI+ I FP+A A +ME Sbjct: 117 --AGFKADDKLIAAAEACIAELNLNAVRGLIVSGDAFINGSVGLAKIRHNFPQAIAVEME 174 Query: 177 GAAIAQTAYQFGVPFLAVRAISDIAGSDAAGLFKSHLELAAANSAEVV 224 AIA + F VPF+ VRAISD+A + F L +AA S+ +V Sbjct: 175 ATAIAHVCHNFNVPFVVVRAISDVADQQSHLSFDEFLAVAAKQSSLMV 222 Score = 160 bits (405), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 100/228 (43%), Positives = 134/228 (58%), Gaps = 10/228 (4%) Query: 1 MSIAVIGAMEEEVAPLLPKLRDVRSLKAGGGKLYAGVLDGQEVVLLQSGIGKVNAAVTTT 60 M I +IGAMEEEV L K+ + +++ GG ++Y G L+G EV LL+SGIGKV AA+ T Sbjct: 1 MKIGIIGAMEEEVTLLRDKIENRQTISLGGCEIYTGQLNGTEVALLKSGIGKVAAALGAT 60 Query: 61 LLLERFHCELIINTGAAGGLAADLKVGDVVIAEELVYSDVDATAFSYAFGQVPQMPQRYP 120 LLLE ++IINTG+AGGLA LKVGD+V+++E Y D D TAF Y +GQ+P P Sbjct: 61 LLLEHCKPDVIINTGSAGGLAPTLKVGDIVVSDEARYHDADVTAFGYEYGQLPGCP---- 116 Query: 121 VAAGLLAQARKLVRRGVRQE----QIVTGLITTADSFISDPERAVSIVSRFPEAKATDME 176 AG A + + V GLI + D+FI+ I FP+A A +ME Sbjct: 117 --AGFKADDKLIAAAEACIAELNLNAVRGLIVSGDAFINGSVGLAKIRHNFPQAIAVEME 174 Query: 177 GAAIAQTAYQFGVPFLAVRAISDIAGSDAAGLFKSHLELAAANSAEVV 224 AIA + F VPF+ VRAISD+A + F L +AA S+ +V Sbjct: 175 ATAIAHVCHNFNVPFVVVRAISDVADQQSHLSFDEFLAVAAKQSSLMV 222 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.318 0.134 0.365 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 16,253,767 Number of extensions: 699997 Number of successful extensions: 1808 Number of sequences better than 1.0e-05: 25 Number of HSP's gapped: 1824 Number of HSP's successfully gapped: 25 Length of query: 239 Length of database: 38,378,431 Length adjustment: 103 Effective length of query: 136 Effective length of database: 26,499,029 Effective search space: 3603867944 Effective search space used: 3603867944 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 114 (48.5 bits)