BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0305.0039.p (173 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value STM2166 [G] COG1472 Beta-glucosidase-related glycosidases 144 9e-35 ZbglX [G] COG1472 Beta-glucosidase-related glycosidases 143 1e-34 ECs3019 [G] COG1472 Beta-glucosidase-related glycosidases 143 1e-34 bglX [G] COG1472 Beta-glucosidase-related glycosidases 143 1e-34 ZbglX [G] COG1472 Beta-glucosidase-related glycosidases 143 1e-34 >STM2166 [G] COG1472 Beta-glucosidase-related glycosidases Length = 765 Score = 144 bits (362), Expect = 9e-35, Method: Compositional matrix adjust. Identities = 74/171 (43%), Positives = 102/171 (59%), Gaps = 15/171 (8%) Query: 2 NPSGKLPVSLPRSSGQLPVYYNQKDPGRP----------RVYVDMPSAPLYPFGHGLSYT 51 NPSGKLP+S PRS GQ+PVYY+ + GRP Y D + PLYPFG+GLSYT Sbjct: 590 NPSGKLPISFPRSVGQIPVYYSHLNTGRPYNPEKPNKYTSRYFDEANGPLYPFGYGLSYT 649 Query: 52 RFEYSSVALSADSISAGDLKAGREVAASIKVRNTGTSRGMETVQLYIRARESGITRRIAE 111 F S V LS+ + ++ +V AS++V NTG G +Q+Y++ + ++R + + Sbjct: 650 TFTVSDVTLSSPT-----MQRDGKVTASVEVTNTGKREGATVIQMYLQDVTASMSRPVKQ 704 Query: 112 LKGFHKITLQPNEEKTVTFRLGVEELGVWNTAMKFAPVPCRVTVMAGGSSA 162 LKGF KITL+P E KTV+F + +E L WN MK+ P + V G SA Sbjct: 705 LKGFEKITLKPGERKTVSFPIDIEALKFWNQQMKYDAEPGKFNVFIGVDSA 755 >ZbglX [G] COG1472 Beta-glucosidase-related glycosidases Length = 765 Score = 143 bits (360), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 76/178 (42%), Positives = 103/178 (57%), Gaps = 15/178 (8%) Query: 2 NPSGKLPVSLPRSSGQLPVYYNQKDPGRP----------RVYVDMPSAPLYPFGHGLSYT 51 NPSGKLP+S PRS GQ+PVYY+ + GRP Y D + LYPFG+GLSYT Sbjct: 590 NPSGKLPMSFPRSVGQIPVYYSHLNTGRPYNADKPNKYTSRYFDEANGALYPFGYGLSYT 649 Query: 52 RFEYSSVALSADSISAGDLKAGREVAASIKVRNTGTSRGMETVQLYIRARESGITRRIAE 111 F S V LSA + +K +V AS++V NTG G VQ+Y++ + ++R + + Sbjct: 650 TFTVSDVKLSAPT-----MKRDGKVTASVQVTNTGKREGATVVQMYLQDVTASMSRPVKQ 704 Query: 112 LKGFHKITLQPNEEKTVTFRLGVEELGVWNTAMKFAPVPCRVTVMAGGSSADTQAAEL 169 LKGF KITL+P E +TV+F + +E L WN MK+ P + V G SA + E Sbjct: 705 LKGFEKITLKPGETQTVSFPIDIEALKFWNQQMKYDAEPGKFNVFIGTDSARVKKGEF 762 >ECs3019 [G] COG1472 Beta-glucosidase-related glycosidases Length = 765 Score = 143 bits (360), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 76/178 (42%), Positives = 103/178 (57%), Gaps = 15/178 (8%) Query: 2 NPSGKLPVSLPRSSGQLPVYYNQKDPGRP----------RVYVDMPSAPLYPFGHGLSYT 51 NPSGKLP+S PRS GQ+PVYY+ + GRP Y D + LYPFG+GLSYT Sbjct: 590 NPSGKLPMSFPRSVGQIPVYYSHLNTGRPYNADKPNKYTSRYFDEANGALYPFGYGLSYT 649 Query: 52 RFEYSSVALSADSISAGDLKAGREVAASIKVRNTGTSRGMETVQLYIRARESGITRRIAE 111 F S V LSA + +K +V AS++V NTG G VQ+Y++ + ++R + + Sbjct: 650 TFTVSDVKLSAPT-----MKRDGKVTASVQVTNTGKREGATVVQMYLQDVTASMSRPVKQ 704 Query: 112 LKGFHKITLQPNEEKTVTFRLGVEELGVWNTAMKFAPVPCRVTVMAGGSSADTQAAEL 169 LKGF KITL+P E +TV+F + +E L WN MK+ P + V G SA + E Sbjct: 705 LKGFEKITLKPGETQTVSFPIDIEALKFWNQQMKYDAEPGKFNVFIGTDSARVKKGEF 762 >bglX [G] COG1472 Beta-glucosidase-related glycosidases Length = 765 Score = 143 bits (360), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 76/178 (42%), Positives = 103/178 (57%), Gaps = 15/178 (8%) Query: 2 NPSGKLPVSLPRSSGQLPVYYNQKDPGRP----------RVYVDMPSAPLYPFGHGLSYT 51 NPSGKLP+S PRS GQ+PVYY+ + GRP Y D + LYPFG+GLSYT Sbjct: 590 NPSGKLPMSFPRSVGQIPVYYSHLNTGRPYNADKPNKYTSRYFDEANGALYPFGYGLSYT 649 Query: 52 RFEYSSVALSADSISAGDLKAGREVAASIKVRNTGTSRGMETVQLYIRARESGITRRIAE 111 F S V LSA + +K +V AS++V NTG G VQ+Y++ + ++R + + Sbjct: 650 TFTVSDVKLSAPT-----MKRDGKVTASVQVTNTGKREGATVVQMYLQDVTASMSRPVKQ 704 Query: 112 LKGFHKITLQPNEEKTVTFRLGVEELGVWNTAMKFAPVPCRVTVMAGGSSADTQAAEL 169 LKGF KITL+P E +TV+F + +E L WN MK+ P + V G SA + E Sbjct: 705 LKGFEKITLKPGETQTVSFPIDIEALKFWNQQMKYDAEPGKFNVFIGTDSARVKKGEF 762 Score = 143 bits (360), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 76/178 (42%), Positives = 103/178 (57%), Gaps = 15/178 (8%) Query: 2 NPSGKLPVSLPRSSGQLPVYYNQKDPGRP----------RVYVDMPSAPLYPFGHGLSYT 51 NPSGKLP+S PRS GQ+PVYY+ + GRP Y D + LYPFG+GLSYT Sbjct: 590 NPSGKLPMSFPRSVGQIPVYYSHLNTGRPYNADKPNKYTSRYFDEANGALYPFGYGLSYT 649 Query: 52 RFEYSSVALSADSISAGDLKAGREVAASIKVRNTGTSRGMETVQLYIRARESGITRRIAE 111 F S V LSA + +K +V AS++V NTG G VQ+Y++ + ++R + + Sbjct: 650 TFTVSDVKLSAPT-----MKRDGKVTASVQVTNTGKREGATVVQMYLQDVTASMSRPVKQ 704 Query: 112 LKGFHKITLQPNEEKTVTFRLGVEELGVWNTAMKFAPVPCRVTVMAGGSSADTQAAEL 169 LKGF KITL+P E +TV+F + +E L WN MK+ P + V G SA + E Sbjct: 705 LKGFEKITLKPGETQTVSFPIDIEALKFWNQQMKYDAEPGKFNVFIGTDSARVKKGEF 762 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.315 0.132 0.380 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 12,613,059 Number of extensions: 482869 Number of successful extensions: 1914 Number of sequences better than 1.0e-05: 21 Number of HSP's gapped: 1870 Number of HSP's successfully gapped: 21 Length of query: 173 Length of database: 38,378,431 Length adjustment: 99 Effective length of query: 74 Effective length of database: 26,960,365 Effective search space: 1995067010 Effective search space used: 1995067010 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 112 (47.8 bits)