BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0305.0034.p (293 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BS_yurN [G] COG1175 ABC-type sugar transport systems, permease c... 179 3e-45 lin0218 [G] COG1175 ABC-type sugar transport systems, permease c... 176 3e-44 Rv2040c [G] COG1175 ABC-type sugar transport systems, permease c... 172 6e-43 MT2100 [G] COG1175 ABC-type sugar transport systems, permease co... 172 6e-43 ML1426 [G] COG1175 ABC-type sugar transport systems, permease co... 163 2e-40 >BS_yurN [G] COG1175 ABC-type sugar transport systems, permease components Length = 292 Score = 179 bits (455), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 95/233 (40%), Positives = 142/233 (60%), Gaps = 3/233 (1%) Query: 37 SVMDWNGIG-KMTFIGLDNYSRILTDDTFWLSVQNNVVIMLTGLVGQIPLGLIMALLLNR 95 S+ W+ + TFIGL NY + D F+ ++ NNV+ + +V Q+ GLI+A +L Sbjct: 34 SLFQWSSFSPEKTFIGLKNYVELFHDPVFYQALTNNVLYAVISIVCQVFGGLILAAVLED 93 Query: 96 GL--KGSGFFRTVGFMPVVISSVMVSLIWGMIYNTEYGMLNSMLAFFGLGSWQQNWLGDM 153 L K S FFRTV F+PVVIS +++L++ IYN E G+LN +L GL + WLGD Sbjct: 94 KLVRKWSPFFRTVFFLPVVISMTVIALLFDFIYNPETGLLNQLLQAIGLDQLTRAWLGDD 153 Query: 154 KWSMLSISVAYIWQNCGLYMVIFLAALQNIPDEVNEAAELDGATGFRRTLHITIPMLRST 213 +MLS+ WQ+ G ++++ ++Q IPDE+ EAA LDGA ++ HIT+P + Sbjct: 154 STAMLSVIFVSQWQSVGYIAMLYIVSIQKIPDELYEAARLDGAGKIQQFFHITVPQTKEM 213 Query: 214 IMVAVVYSISNSFRVFDLIQVLTGGGPAHQTEVMTLYMYNSAFMNLRYGYGSA 266 VAVV +++ +F VF+ +LTGGGP +EV++ ++Y SAF GY SA Sbjct: 214 SFVAVVMTLTGAFTVFNEPYILTGGGPGKASEVLSTFLYKSAFTKDMMGYASA 266 >lin0218 [G] COG1175 ABC-type sugar transport systems, permease components Length = 292 Score = 176 bits (447), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 89/230 (38%), Positives = 133/230 (57%), Gaps = 2/230 (0%) Query: 37 SVMDWNGIGKMTFIGLDNYSRILTDDTFWLSVQNNVVIMLTGLVGQIPLGLIMALLLNRG 96 S DW+ + + F G +NY R+ D FW S +N + ++ L + LGL AL+LN+ Sbjct: 39 SFTDWDLVSTIHFTGFENYKRLFNDPEFWKSFRNTITFIIGYLPSVMILGLACALMLNQK 98 Query: 97 LKGSGFFRTVGFMPVVISSVMVSLIWGMIYNTEYGMLNSMLAFFGLGSWQQNWLGDMKWS 156 +K FFR V F+PV+ S V VSL+W ++N YG++N L+ G+ NWL D + + Sbjct: 99 IKLRPFFRAVYFLPVITSWVAVSLVWKWLFNPSYGLINYFLSLIGIAG--PNWLTDPQTA 156 Query: 157 MLSISVAYIWQNCGLYMVIFLAALQNIPDEVNEAAELDGATGFRRTLHITIPMLRSTIMV 216 M+++ + W++ G MV+FL LQNI EAA +DGA+ R+ ITIP+L T Sbjct: 157 MIAVIITSAWKDIGFVMVLFLGGLQNISPSYYEAANMDGASKLRQLFSITIPLLTPTTFF 216 Query: 217 AVVYSISNSFRVFDLIQVLTGGGPAHQTEVMTLYMYNSAFMNLRYGYGSA 266 + S+ NSF+VFD + ++T GGP+ T + +YN AF GY SA Sbjct: 217 VTIISLINSFQVFDQVMIMTEGGPSGATMTLVQNIYNHAFRYFEMGYASA 266 >Rv2040c [G] COG1175 ABC-type sugar transport systems, permease components Length = 300 Score = 172 bits (436), Expect = 6e-43, Method: Compositional matrix adjust. Identities = 89/233 (38%), Positives = 144/233 (61%), Gaps = 5/233 (2%) Query: 37 SVMDWNGIGKMTFIGLDNYSRILTDDT-FWLSVQNNVVIMLTGLVGQIPLGLIMALLLNR 95 S W+ TF+ LDN+ + T D F ++V N V + +V + + L++A LNR Sbjct: 38 SFQKWDLFTHATFVRLDNFRNLFTSDPLFLIAVVNTAVYTVGTVVPTVIVSLVVAAFLNR 97 Query: 96 GLKGSGFFRTVGFMPVVISSVMVSLIWGMIYNTEYGMLNSMLAFFGLGSWQQNWLGDMKW 155 +KG FRTV F+P+ ISSV+++++W ++NT+ G+LN ML + G+G WL + +W Sbjct: 98 KIKGISLFRTVVFLPLAISSVVMAVVWQFVFNTDNGLLNIMLGWLGIGP--IPWLIEPRW 155 Query: 156 SMLSISVAYIWQNCGLYMVIFLAALQNIPDEVNEAAELDGATGFRRTLHITIPMLRSTIM 215 +M+S+ + +W++ V+ LAA+Q +P+ V EAA +DGA R+ + IT+P++R + Sbjct: 156 AMVSLCLVSVWRSVPFATVVLLAAMQGVPETVYEAARIDGAGEIRQFVSITVPLIRGALS 215 Query: 216 VAVVYSISNSFRVFDLIQVLTG--GGPAHQTEVMTLYMYNSAFMNLRYGYGSA 266 VV SI ++F+ FDL+ VLTG GGP T V+ + ++ AF L +GY SA Sbjct: 216 FVVVISIIHAFQAFDLVYVLTGANGGPETATYVLGIMLFQHAFSFLEFGYASA 268 >MT2100 [G] COG1175 ABC-type sugar transport systems, permease components Length = 300 Score = 172 bits (436), Expect = 6e-43, Method: Compositional matrix adjust. Identities = 89/233 (38%), Positives = 144/233 (61%), Gaps = 5/233 (2%) Query: 37 SVMDWNGIGKMTFIGLDNYSRILTDDT-FWLSVQNNVVIMLTGLVGQIPLGLIMALLLNR 95 S W+ TF+ LDN+ + T D F ++V N V + +V + + L++A LNR Sbjct: 38 SFQKWDLFTHATFVRLDNFRNLFTSDPLFLIAVVNTAVYTVGTVVPTVIVSLVVAAFLNR 97 Query: 96 GLKGSGFFRTVGFMPVVISSVMVSLIWGMIYNTEYGMLNSMLAFFGLGSWQQNWLGDMKW 155 +KG FRTV F+P+ ISSV+++++W ++NT+ G+LN ML + G+G WL + +W Sbjct: 98 KIKGISLFRTVVFLPLAISSVVMAVVWQFVFNTDNGLLNIMLGWLGIGP--IPWLIEPRW 155 Query: 156 SMLSISVAYIWQNCGLYMVIFLAALQNIPDEVNEAAELDGATGFRRTLHITIPMLRSTIM 215 +M+S+ + +W++ V+ LAA+Q +P+ V EAA +DGA R+ + IT+P++R + Sbjct: 156 AMVSLCLVSVWRSVPFATVVLLAAMQGVPETVYEAARIDGAGEIRQFVSITVPLIRGALS 215 Query: 216 VAVVYSISNSFRVFDLIQVLTG--GGPAHQTEVMTLYMYNSAFMNLRYGYGSA 266 VV SI ++F+ FDL+ VLTG GGP T V+ + ++ AF L +GY SA Sbjct: 216 FVVVISIIHAFQAFDLVYVLTGANGGPETATYVLGIMLFQHAFSFLEFGYASA 268 >ML1426 [G] COG1175 ABC-type sugar transport systems, permease components Length = 319 Score = 163 bits (413), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 86/233 (36%), Positives = 141/233 (60%), Gaps = 5/233 (2%) Query: 37 SVMDWNGIGKMTFIGLDNYSRILTDDT-FWLSVQNNVVIMLTGLVGQIPLGLIMALLLNR 95 S W+ F+GL N+ + T D F +++ N+VV + ++ + + L++A +LN+ Sbjct: 57 SFQKWDMFTPPVFVGLANFQNLFTSDPLFLIALCNSVVFTVGTVIPTVLISLVVAGVLNQ 116 Query: 96 GLKGSGFFRTVGFMPVVISSVMVSLIWGMIYNTEYGMLNSMLAFFGLGSWQQNWLGDMKW 155 +KG G FRT+ F+P+ ISSV+++++W I+NT G+LN ML + G+G WL + W Sbjct: 117 KVKGIGIFRTIVFLPLAISSVVMAVVWQFIFNTHNGLLNIMLGWIGIG--PIPWLVNPGW 174 Query: 156 SMLSISVAYIWQNCGLYMVIFLAALQNIPDEVNEAAELDGATGFRRTLHITIPMLRSTIM 215 +M S+ + +W++ V+ LAA+Q +P V EAA++DGA R+ + IT+P +R I Sbjct: 175 AMASLCIVSVWRSVPFATVVLLAAMQEVPKTVYEAAKIDGAGEIRQFISITVPFIRGAIS 234 Query: 216 VAVVYSISNSFRVFDLIQVLTG--GGPAHQTEVMTLYMYNSAFMNLRYGYGSA 266 VV S ++F+ FDL+ VL G GGP T V+ + ++ AF L +GY SA Sbjct: 235 FVVVISFIHAFQTFDLVYVLNGPNGGPELATYVLGIMLFQHAFSFLEFGYASA 287 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.326 0.140 0.432 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 18,679,180 Number of extensions: 710463 Number of successful extensions: 2261 Number of sequences better than 1.0e-05: 159 Number of HSP's gapped: 2067 Number of HSP's successfully gapped: 160 Length of query: 293 Length of database: 38,378,431 Length adjustment: 106 Effective length of query: 187 Effective length of database: 26,153,027 Effective search space: 4890616049 Effective search space used: 4890616049 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 115 (48.9 bits)