BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0305.0024.p (277 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value MT2099 [G] COG0395 ABC-type sugar transport system, permease com... 135 7e-32 Rv2039c [G] COG0395 ABC-type sugar transport system, permease co... 132 4e-31 ML1425 [G] COG0395 ABC-type sugar transport system, permease com... 132 7e-31 lin1843 [G] COG0395 ABC-type sugar transport system, permease co... 127 2e-29 BH1119 [G] COG0395 ABC-type sugar transport system, permease com... 125 7e-29 >MT2099 [G] COG0395 ABC-type sugar transport system, permease component Length = 280 Score = 135 bits (340), Expect = 7e-32, Method: Compositional matrix adjust. Identities = 82/259 (31%), Positives = 131/259 (50%), Gaps = 3/259 (1%) Query: 14 YLTLILGALMALVPIVVVFFASLKTNKEYASTGPLTLPENWLNFSNYSKAFIDGNMLLGF 73 Y LI A AL PI+ SLK + E T P P + +SNY + F F Sbjct: 19 YAGLIGIAWCALFPIIWALSGSLKADGEV--TEPTLFPSH-PQWSNYREVFALMPFWRMF 75 Query: 74 MNTIIIVLISIAGATLTGSMMAYILARFRFKGSKLLMGAFLLATLIPGVTTQVATFQIIN 133 NT++ AG S+ Y AR +F+G L +L ++P T + F ++ Sbjct: 76 FNTVLYAGCVTAGQVFFCSLAGYAFARLQFRGRDTLFVLYLSTLMVPLTVTVIPQFILMR 135 Query: 134 SLELFNTRWAPILMYLGTDIIAVYIFMQFLDSISESLDESAMLDGASYWTIYWRIILPLL 193 + +T WA I+ L Y+ QF ++ L+E+A+LDG S W IYWRI+LP Sbjct: 136 IVGWVDTPWAMIVPGLFGSAFGTYLMRQFFRTLPTDLEEAAILDGCSPWQIYWRILLPHS 195 Query: 194 SPAIVTVIIVKGVNIYNDFYTPFLYMPKSSLQVVSTALFKFKGPYGSQWEVICAAIMIAI 253 PA++ + ++ VN++NDF P L + ++SL ++ L + +G Y ++W V+ AA M+ + Sbjct: 196 RPAVLVLGVLTWVNVWNDFLWPLLMIQRNSLATLTLGLVRLRGEYVARWPVLMAASMLML 255 Query: 254 IPTLIAFIALQKYIYNGFA 272 +P +I + Q+ G A Sbjct: 256 VPLVILYAVAQRSFVRGIA 274 >Rv2039c [G] COG0395 ABC-type sugar transport system, permease component Length = 280 Score = 132 bits (333), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 81/259 (31%), Positives = 130/259 (50%), Gaps = 3/259 (1%) Query: 14 YLTLILGALMALVPIVVVFFASLKTNKEYASTGPLTLPENWLNFSNYSKAFIDGNMLLGF 73 Y LI A AL PI+ SLK + E T P P + +SNY + F F Sbjct: 19 YAGLIGIAWCALFPIIWALSGSLKADGEV--TEPTLFPSH-PQWSNYREVFALMPFWRMF 75 Query: 74 MNTIIIVLISIAGATLTGSMMAYILARFRFKGSKLLMGAFLLATLIPGVTTQVATFQIIN 133 NT++ AG S+ Y AR +F+G L +L ++P T + ++ Sbjct: 76 FNTVLYAGCVTAGQVFFCSLAGYAFARLQFRGRDTLFVLYLSTLMVPLTVTVIPQVILMR 135 Query: 134 SLELFNTRWAPILMYLGTDIIAVYIFMQFLDSISESLDESAMLDGASYWTIYWRIILPLL 193 + +T WA I+ L Y+ QF ++ L+E+A+LDG S W IYWRI+LP Sbjct: 136 IVGWVDTPWAMIVPGLFGSAFGTYLMRQFFRTLPTDLEEAAILDGCSPWQIYWRILLPHS 195 Query: 194 SPAIVTVIIVKGVNIYNDFYTPFLYMPKSSLQVVSTALFKFKGPYGSQWEVICAAIMIAI 253 PA++ + ++ VN++NDF P L + ++SL ++ L + +G Y ++W V+ AA M+ + Sbjct: 196 RPAVLVLGVLTWVNVWNDFLWPLLMIQRNSLATLTLGLVRLRGEYVARWPVLMAASMLML 255 Query: 254 IPTLIAFIALQKYIYNGFA 272 +P +I + Q+ G A Sbjct: 256 VPLVILYAVAQRSFVRGIA 274 >ML1425 [G] COG0395 ABC-type sugar transport system, permease component Length = 283 Score = 132 bits (331), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 85/270 (31%), Positives = 133/270 (49%), Gaps = 4/270 (1%) Query: 2 HTLKYN-LASFFKYLTLILGALMALVPIVVVFFASLKTNKEYASTGPLTLPENWLNFSNY 60 H +K + L + Y+ L A AL PIV SLK E P LP + +SNY Sbjct: 9 HIVKRSVLRAVVVYIALTGIAWCALFPIVWALSGSLKKEGEIRE--PTLLPAH-PQWSNY 65 Query: 61 SKAFIDGNMLLGFMNTIIIVLISIAGATLTGSMMAYILARFRFKGSKLLMGAFLLATLIP 120 ++ F F NT++ G S+ Y AR +F+G L +L ++P Sbjct: 66 TEVFDLIPFWRMFFNTVLYAGYVTVGQVFFCSLAGYAFARLQFRGRDALFVLYLGTLMMP 125 Query: 121 GVTTQVATFQIINSLELFNTRWAPILMYLGTDIIAVYIFMQFLDSISESLDESAMLDGAS 180 T + F ++ L +T WA I+ L Y+ QF ++ L+E+A+LDG S Sbjct: 126 LTVTIIPQFILMRVLGWTDTPWAMIVPGLFGSAFGTYLMRQFFRTLPSDLEEAAILDGCS 185 Query: 181 YWTIYWRIILPLLSPAIVTVIIVKGVNIYNDFYTPFLYMPKSSLQVVSTALFKFKGPYGS 240 W IYWR++LP PA+ + ++ VN++NDF P L + ++SL ++ L + +G YG+ Sbjct: 186 PWQIYWRVLLPHAKPAVGVLAVLTWVNVWNDFLWPLLMIQRNSLATLTLGLVRMRGEYGT 245 Query: 241 QWEVICAAIMIAIIPTLIAFIALQKYIYNG 270 W VI A M+ I+P +I + Q+ G Sbjct: 246 CWPVIMATSMLIILPLVIIYTIAQRAFVRG 275 >lin1843 [G] COG0395 ABC-type sugar transport system, permease component Length = 276 Score = 127 bits (319), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 82/261 (31%), Positives = 131/261 (50%), Gaps = 3/261 (1%) Query: 17 LILGALMALVPIVVVFFASLKTNKEYASTGPLTLPENWLNFSNYSKAFIDGNMLLGFMNT 76 L +G ++P + + +SLKT+ E P PE + N++K F + + + NT Sbjct: 19 LTVGGFFMILPFIWMVLSSLKTDAEILKIPPTIWPETF-TLDNFTKLFTEMDFAIYLKNT 77 Query: 77 IIIVLISIAGATLTGSMMAYILARFRFKGSKLLMGAFLLATLIPGVTTQVATFQIINSLE 136 +IIV S G L +M Y A+F+FKG L L +IPG T + + ++N+ Sbjct: 78 LIIVFFSFFGLFLN-AMAGYGFAKFKFKGKNKLFYLVLATMMIPGQVTMIPVYLLLNAAG 136 Query: 137 LFNTRWAPILMYLGTDIIAVYIFMQFLDSISESLDESAMLDGASYWTIYWRIILPLLSPA 196 L NT +L L +++F QF+ +IS+ L E+A LDGAS + I+WRI++P+ P Sbjct: 137 LTNTMTGIVLPGL-VGAFGIFLFRQFMSTISDDLLEAARLDGASEFYIFWRIVIPISRPV 195 Query: 197 IVTVIIVKGVNIYNDFYTPFLYMPKSSLQVVSTALFKFKGPYGSQWEVICAAIMIAIIPT 256 + I+ + +N F P + +S L KG YGS + + A +IP Sbjct: 196 LAVQGILTFIAGWNSFLWPLIIANDEKFYTLSVGLQLLKGQYGSNYALQMAGATFMVIPI 255 Query: 257 LIAFIALQKYIYNGFAQGSVK 277 ++ F+ QKYI GF +K Sbjct: 256 ILIFMTFQKYILKGFNVSGMK 276 >BH1119 [G] COG0395 ABC-type sugar transport system, permease component Length = 281 Score = 125 bits (314), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 82/281 (29%), Positives = 143/281 (50%), Gaps = 4/281 (1%) Query: 1 MHTLKYNLASFFKYLTLILGALMALVPIVVVFFASLKTNKEYASTGPLTLPEN--WLNFS 58 M T + A Y +I + + PI+ + +SLK E S +P W N+ Sbjct: 1 MKTKRTWYADVIYYGFVIAFGFIMVYPILWMVASSLKPASEIFSQASSLIPSEFVWSNYP 60 Query: 59 NYSKAFIDGNMLLGFMNTIIIVLISIAGATLTGSMMAYILARFRFKGSKLLMGAFLLATL 118 + F + F N+ II + GA L+ S++AY AR +FK K+L + + Sbjct: 61 DGWAGFGRTGFDIYFKNSFIITTSVVIGAILSSSIVAYGFARLQFKFKKVLFACLIATVM 120 Query: 119 IPGVTTQVATFQIINSLELFNTRWAPIL-MYLGTDIIAVYIFMQFLDSISESLDESAMLD 177 +P T + + + ++L NT + I+ +LG +++ +QF+ I LDE+A++D Sbjct: 121 LPVQITLIPQYILFHNLGWVNTFYPLIVPAFLGGTPFFIFLLIQFIRGIPRELDEAAIID 180 Query: 178 GASYWTIYWRIILPLLSPAIVTVIIVKGVNIYNDFYTPFLYMPKSSLQVVSTALFKF-KG 236 G S + ++WR+ILPLL PA+VTV I + ++DF P +Y+ K+ +Q V+ L F Sbjct: 181 GCSTFGVFWRVILPLLKPALVTVAIFAFMWTWDDFLAPLIYLNKTDIQTVALGLRNFMDA 240 Query: 237 PYGSQWEVICAAIMIAIIPTLIAFIALQKYIYNGFAQGSVK 277 G+ W + A ++++P I F+ Q+Y+ G + +K Sbjct: 241 ESGTSWGALLAMSTLSLLPQFIIFLFFQRYLVEGISTTGLK 281 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.328 0.141 0.420 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 18,482,196 Number of extensions: 741709 Number of successful extensions: 2926 Number of sequences better than 1.0e-05: 214 Number of HSP's gapped: 2698 Number of HSP's successfully gapped: 219 Length of query: 277 Length of database: 38,378,431 Length adjustment: 105 Effective length of query: 172 Effective length of database: 26,268,361 Effective search space: 4518158092 Effective search space used: 4518158092 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 115 (48.9 bits)