BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0305.0023.p (293 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BS_yurN [G] COG1175 ABC-type sugar transport systems, permease c... 125 1e-28 AGpA781 [E] COG0411 ABC-type branched-chain amino acid transport... 121 1e-27 AGpA786 [R] COG0431 Predicted flavoprotein 121 1e-27 AGpA780 [E] COG0559 Branched-chain amino acid ABC-type transport... 121 1e-27 lin0218 [G] COG1175 ABC-type sugar transport systems, permease c... 118 1e-26 >BS_yurN [G] COG1175 ABC-type sugar transport systems, permease components Length = 292 Score = 125 bits (313), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 74/246 (30%), Positives = 129/246 (52%), Gaps = 8/246 (3%) Query: 33 YLPVFKMFQYSFTSWNGFSKNMEYVGFDNYKTIFTKPEYF-AVFKVSLYYFFATFVQMGL 91 Y+P+F+ S W+ FS ++G NY +F P ++ A+ LY + Q+ Sbjct: 24 YIPIFENVFLSLFQWSSFSPEKTFIGLKNYVELFHDPVFYQALTNNVLYAVISIVCQVFG 83 Query: 92 ALYFATILSFNVRMKNW---FKGILFFPTLLNGVAIGFIFLFFFKPE-GTLNTILDLVGL 147 L A +L + ++ W F+ + F P +++ I +F F + PE G LN +L +GL Sbjct: 84 GLILAAVLE-DKLVRKWSPFFRTVFFLPVVISMTVIALLFDFIYNPETGLLNQLLQAIGL 142 Query: 148 GAWQQKWLLNPQLINISLAFASVWRYMGMNFIIFLGAISSIGGDIYEASEIDGANRWHQF 207 + WL + +S+ F S W+ +G ++++ +I I ++YEA+ +DGA + QF Sbjct: 143 DQLTRAWLGDDSTAMLSVIFVSQWQSVGYIAMLYIVSIQKIPDELYEAARLDGAGKIQQF 202 Query: 208 RHIIIPSIKRILQLNLILAVSGAIGVFEIPYVMTGGSNGSGTFVIQTV--DVAFKYSKLG 265 HI +P K + + +++ ++GA VF PY++TGG G + V+ T AF +G Sbjct: 203 FHITVPQTKEMSFVAVVMTLTGAFTVFNEPYILTGGGPGKASEVLSTFLYKSAFTKDMMG 262 Query: 266 LASAMA 271 ASA+A Sbjct: 263 YASAIA 268 >AGpA781 [E] COG0411 ABC-type branched-chain amino acid transport systems, ATPase component Length = 373 Score = 121 bits (303), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 13/247 (5%), Positives = 37/247 (14%), Gaps = 12/247 (4%) Query: 32 SYLPVFKMFQYSFTSWNGFSKNMEYVGFDNYKTIFTKPEYF-AVFKVSLYYFFATFVQMG 90 + S++ + + Sbjct: 56 KAVIPAIQSSRLGRVVAIASRDAAKAKEMTARFGIARSYGSYEDLLADPEIDAIYNPLPN 115 Query: 91 LALYFATIL---SFNVRMKNWFKGILFFPTLLNGVAIGFIFLFFFKPE-GTLNTILDLVG 146 TI + + + + Sbjct: 116 HLHVPMTIKALEQGKPVL---CEKPIALDAAQARELATAQKAASLPVAEAFMVRHHPQWK 172 Query: 147 LGAWQQKWLLNPQLINISLAFASVWRYMGMNFIIFLGAISSIGGDIYEASEIDGANRWHQ 206 ++ + + I G I+ A Sbjct: 173 KAHAL--ITEGRLGEVRAIQTIFSYYLDDPGNVRNQVDIGGGGLFDVGCYAINTARFLFD 230 Query: 207 FRHIIIPSIKRILQLNLILAVSGAIGVFEIPYVMT-GGSNGSGTFVIQTV-DVAFKYSKL 264 + ++ + ++ + F + S TV + Sbjct: 231 AEPLRAIALMERDPVFGTDRLTSGLLAFPEGKQLAFTCSTQLSLTQKVTVLGTRGRLEIP 290 Query: 265 GLASAMA 271 +A A Sbjct: 291 IPFNAPA 297 >AGpA786 [R] COG0431 Predicted flavoprotein Length = 323 Score = 121 bits (303), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 77/247 (31%), Positives = 132/247 (53%), Gaps = 12/247 (4%) Query: 32 SYLPVFKMFQYSFTSWNGFSKNMEYVGFDNYKTIFTKPEYF-AVFKVSLYYFFATFVQMG 90 +Y+P+ SF WN S NM +VGF NY+ + + + +++ +L+ + +++G Sbjct: 56 TYIPILASLNLSFREWNFLSPNMPFVGFRNYEQLLASRDLWNSLWVTTLFAVLSVPLRLG 115 Query: 91 LALYFATIL---SFNVRMKNWFKGILFFPTLLNGVAIGFIFLFFFKPE-GTLNTILDLVG 146 LAL A L S +VR+ +G LF P++ + V+I +F + F + G N +L G Sbjct: 116 LALVIAAYLVRESVHVRL---LRGALFLPSVTSTVSIAVVFSWVFSTDYGMANALLGTFG 172 Query: 147 LGAWQQKWLLNPQLINISLAFASVWRYMGMNFIIFLGAISSIGGDIYEASEIDGANRWHQ 206 LG Q WL NP L L F + W+ +G + +I++ + +I ++Y+A+ +DG R H Sbjct: 173 LGKVQ--WLQNPHLALWVLIFVNTWKQIGYDIVIYIAGLQAIPRELYDAAAVDGGKRLHV 230 Query: 207 FRHIIIPSIKRILQLNLILAVSGAIGVFEIPYVMT-GGSNGSGTFVIQTV-DVAFKYSKL 264 FR I +P + L+++V A VF I VMT GG G+ ++ + ++ F + Sbjct: 231 FRRITMPLVMPTTYFLLVISVIEAFQVFTIVNVMTKGGPAGATDMLVSLLYEIGFVLFDI 290 Query: 265 GLASAMA 271 G SA+A Sbjct: 291 GRGSALA 297 >AGpA780 [E] COG0559 Branched-chain amino acid ABC-type transport system, permease components Length = 373 Score = 121 bits (303), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 13/247 (5%), Positives = 37/247 (14%), Gaps = 12/247 (4%) Query: 32 SYLPVFKMFQYSFTSWNGFSKNMEYVGFDNYKTIFTKPEYF-AVFKVSLYYFFATFVQMG 90 + S++ + + Sbjct: 56 KAVIPAIQSSRLGRVVAIASRDAAKAKEMTARFGIARSYGSYEDLLADPEIDAIYNPLPN 115 Query: 91 LALYFATIL---SFNVRMKNWFKGILFFPTLLNGVAIGFIFLFFFKPE-GTLNTILDLVG 146 TI + + + + Sbjct: 116 HLHVPMTIKALEQGKPVL---CEKPIALDAAQARELATAQKAASLPVAEAFMVRHHPQWK 172 Query: 147 LGAWQQKWLLNPQLINISLAFASVWRYMGMNFIIFLGAISSIGGDIYEASEIDGANRWHQ 206 ++ + + I G I+ A Sbjct: 173 KAHAL--ITEGRLGEVRAIQTIFSYYLDDPGNVRNQVDIGGGGLFDVGCYAINTARFLFD 230 Query: 207 FRHIIIPSIKRILQLNLILAVSGAIGVFEIPYVMT-GGSNGSGTFVIQTV-DVAFKYSKL 264 + ++ + ++ + F + S TV + Sbjct: 231 AEPLRAIALMERDPVFGTDRLTSGLLAFPEGKQLAFTCSTQLSLTQKVTVLGTRGRLEIP 290 Query: 265 GLASAMA 271 +A A Sbjct: 291 IPFNAPA 297 >lin0218 [G] COG1175 ABC-type sugar transport systems, permease components Length = 292 Score = 118 bits (296), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 71/244 (29%), Positives = 136/244 (55%), Gaps = 11/244 (4%) Query: 34 LPVFKMFQYSFTSWNGFSKNMEYVGFDNYKTIFTKPEYFAVFKVSLYY---FFATFVQMG 90 +P+ SFT W+ S + + GF+NYK +F PE++ F+ ++ + + + + +G Sbjct: 30 IPILGSLGISFTDWDLVS-TIHFTGFENYKRLFNDPEFWKSFRNTITFIIGYLPSVMILG 88 Query: 91 LALYFATILSFNVRMKNWFKGILFFPTLLNGVAIGFIFLFFFKPE-GTLNTILDLVGLGA 149 LA A +L+ ++++ +F+ + F P + + VA+ ++ + F P G +N L L+G+ Sbjct: 89 LAC--ALMLNQKIKLRPFFRAVYFLPVITSWVAVSLVWKWLFNPSYGLINYFLSLIGIAG 146 Query: 150 WQQKWLLNPQLINISLAFASVWRYMGMNFIIFLGAISSIGGDIYEASEIDGANRWHQFRH 209 WL +PQ I++ S W+ +G ++FLG + +I YEA+ +DGA++ Q Sbjct: 147 --PNWLTDPQTAMIAVIITSAWKDIGFVMVLFLGGLQNISPSYYEAANMDGASKLRQLFS 204 Query: 210 IIIPSIKRILQLNLILAVSGAIGVFEIPYVMT-GGSNGSGTFVIQTV-DVAFKYSKLGLA 267 I IP + I+++ + VF+ +MT GG +G+ ++Q + + AF+Y ++G A Sbjct: 205 ITIPLLTPTTFFVTIISLINSFQVFDQVMIMTEGGPSGATMTLVQNIYNHAFRYFEMGYA 264 Query: 268 SAMA 271 SAM+ Sbjct: 265 SAMS 268 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.328 0.142 0.438 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 18,887,818 Number of extensions: 840321 Number of successful extensions: 2255 Number of sequences better than 1.0e-05: 150 Number of HSP's gapped: 2123 Number of HSP's successfully gapped: 151 Length of query: 293 Length of database: 38,378,431 Length adjustment: 106 Effective length of query: 187 Effective length of database: 26,153,027 Effective search space: 4890616049 Effective search space used: 4890616049 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 115 (48.9 bits)