BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0303.0011.p
         (155 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPy1960 [K] COG1846 Transcriptional regulators                         80   1e-15
STM2813 [K] COG1846 Transcriptional regulators                         64   9e-11
emrR [K] COG1846 Transcriptional regulators                            64   9e-11
ZemrR [K] COG1846 Transcriptional regulators                           64   9e-11
ECs3546 [K] COG1846 Transcriptional regulators                         64   9e-11

>SPy1960 [K] COG1846 Transcriptional regulators
          Length = 142

 Score = 80.1 bits (196), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 44/134 (32%), Positives = 72/134 (53%)

Query: 8   DTQLTLHLYRVFAKSFKSINEHAVTGSKIEGFNPTAFAVMEVLYYKGPQPIQQIGAKLLL 67
           D    L    VF K+ ++++       K      T F+V+EVLY KG   I  +   LL 
Sbjct: 5   DKNTALKAMVVFRKAQRTLDAFGADIFKKADLTATQFSVLEVLYTKGCMRINHLIDSLLA 64

Query: 68  QSGNVTYVIDKLEERGYLQRKPCPSDRRVIFAELTSEGERLMNEMYPKYSERLHLAFSGL 127
            SGN+T V++ +E  G++ +    +D+R     LT +G RL+  + PK+  R+  AF+ L
Sbjct: 65  TSGNMTVVLNNMERNGWISKCKDKTDKRAYVVTLTDKGTRLIEAVLPKHVARVEEAFAVL 124

Query: 128 SDEEKEQMITLLKK 141
           +++E+  +I LLKK
Sbjct: 125 TEKEQLCLIELLKK 138


>STM2813 [K] COG1846 Transcriptional regulators
          Length = 176

 Score = 63.9 bits (154), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 34/110 (30%), Positives = 59/110 (53%), Gaps = 2/110 (1%)

Query: 35  KIEGFNPTAFAVMEVLYYKGPQPIQ--QIGAKLLLQSGNVTYVIDKLEERGYLQRKPCPS 92
           K +G N T F  +  L  +    IQ  ++   L     N T + D+LE+RG+++R+   +
Sbjct: 49  KAQGINETLFMALITLESQENHSIQPSELSCALGSSRTNATRIADELEKRGWIERRESDN 108

Query: 93  DRRVIFAELTSEGERLMNEMYPKYSERLHLAFSGLSDEEKEQMITLLKKM 142
           DRR +  +LT +G+  + E+ P     LH  +S LS  EK+Q+  + +K+
Sbjct: 109 DRRCLHLQLTEKGQAFLQEVLPPQHHCLHQLWSSLSTAEKDQLEHITRKL 158


>emrR [K] COG1846 Transcriptional regulators
          Length = 176

 Score = 63.9 bits (154), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 34/110 (30%), Positives = 58/110 (52%), Gaps = 2/110 (1%)

Query: 35  KIEGFNPTAFAVMEVLYYKGPQPIQ--QIGAKLLLQSGNVTYVIDKLEERGYLQRKPCPS 92
           K +G N T F  +  L  +    IQ  ++   L     N T + D+LE+RG+++R+   +
Sbjct: 49  KAQGINETLFMALITLESQENHSIQPSELSCALGSSRTNATRIADELEKRGWIERRESDN 108

Query: 93  DRRVIFAELTSEGERLMNEMYPKYSERLHLAFSGLSDEEKEQMITLLKKM 142
           DRR +  +LT +G   + E+ P     LH  +S LS  EK+Q+  + +K+
Sbjct: 109 DRRCLHLQLTEKGHEFLREVLPPQHNCLHQLWSALSTTEKDQLEQITRKL 158


>ZemrR [K] COG1846 Transcriptional regulators
          Length = 176

 Score = 63.9 bits (154), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 34/110 (30%), Positives = 58/110 (52%), Gaps = 2/110 (1%)

Query: 35  KIEGFNPTAFAVMEVLYYKGPQPIQ--QIGAKLLLQSGNVTYVIDKLEERGYLQRKPCPS 92
           K +G N T F  +  L  +    IQ  ++   L     N T + D+LE+RG+++R+   +
Sbjct: 49  KAQGINETLFMALITLESQENHSIQPSELSCALGSSRTNATRIADELEKRGWIERRESDN 108

Query: 93  DRRVIFAELTSEGERLMNEMYPKYSERLHLAFSGLSDEEKEQMITLLKKM 142
           DRR +  +LT +G   + E+ P     LH  +S LS  EK+Q+  + +K+
Sbjct: 109 DRRCLHLQLTEKGHEFLREVLPPQHNCLHQLWSALSTTEKDQLEQITRKL 158


>ECs3546 [K] COG1846 Transcriptional regulators
          Length = 176

 Score = 63.9 bits (154), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 34/110 (30%), Positives = 58/110 (52%), Gaps = 2/110 (1%)

Query: 35  KIEGFNPTAFAVMEVLYYKGPQPIQ--QIGAKLLLQSGNVTYVIDKLEERGYLQRKPCPS 92
           K +G N T F  +  L  +    IQ  ++   L     N T + D+LE+RG+++R+   +
Sbjct: 49  KAQGINETLFMALITLESQENHSIQPSELSCALGSSRTNATRIADELEKRGWIERRESDN 108

Query: 93  DRRVIFAELTSEGERLMNEMYPKYSERLHLAFSGLSDEEKEQMITLLKKM 142
           DRR +  +LT +G   + E+ P     LH  +S LS  EK+Q+  + +K+
Sbjct: 109 DRRCLHLQLTEKGHEFLREVLPPQHNCLHQLWSALSTTEKDQLEQITRKL 158


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.317    0.135    0.376 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 10,858,588
Number of extensions: 439587
Number of successful extensions: 4480
Number of sequences better than 1.0e-05: 35
Number of HSP's gapped: 4484
Number of HSP's successfully gapped: 35
Length of query: 155
Length of database: 38,378,431
Length adjustment: 97
Effective length of query: 58
Effective length of database: 27,191,033
Effective search space: 1577079914
Effective search space used: 1577079914
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 111 (47.4 bits)