BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0303.0003.p
         (272 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CAC3665 [R] COG1073 Hydrolases of the alpha/beta superfamily           50   5e-06

>CAC3665 [R] COG1073 Hydrolases of the alpha/beta superfamily
          Length = 265

 Score = 49.7 bits (117), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 56/251 (22%), Positives = 102/251 (40%), Gaps = 25/251 (9%)

Query: 1   MPRNFELPAGEDAVLRCSHFPAQGEAK-SLVVVAHGYKGFKDWGMFPYVAEALSDEH-EV 58
           M ++ E+ +    +    H P +   K  +VV+ HG+ G K    F +V  A   E   +
Sbjct: 7   MQKSVEIKSKSLTLRGVLHMPLEAREKLPIVVIYHGFCGNKMGPHFIFVKLARELEKLGI 66

Query: 59  ISFNFSHAGIGEDLQNFTELEKFARNTYQREIKDMEILLSYLSQHHRFGSLPVFLLGHSR 118
            +  F  AG GE    F ++      T+  E+ D  ++L Y+          + +LG S 
Sbjct: 67  ATIRFDFAGTGESDGEFVDM------TFSNEVYDANVILDYVKTLEFVDKDRISILGFSM 120

Query: 119 GGGDCLLYALDHPAELAGVISWNGTTNL------DLFTEEQKREMRETGRTHVLNGRTGQ 172
           GG    + A D   E+  +  W    N+      D +  ++  E+ E G   V     G+
Sbjct: 121 GGAIASVIAGDRKDEINTLCLWAPAGNMEQIILSDTYIGDKYDEIMEKGIYDVEGLLLGK 180

Query: 173 QMPLDAIIIEDLEQQAERYNILERMKQAAFPAVLIQGSEDGERLRRGSEQLIRFRPDIEW 232
           +       +ED+    ++ NI +R       +++I G+ D       SE+ +    +   
Sbjct: 181 KF------LEDI----KKVNIFDRASAYNKQSLIIHGTSDEIVPLSTSERYLEMYGENTS 230

Query: 233 IQ-IPGGNHTF 242
           ++ + G NH F
Sbjct: 231 LELVEGANHIF 241


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.320    0.138    0.411 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 21,726,850
Number of extensions: 958125
Number of successful extensions: 1651
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1653
Number of HSP's successfully gapped: 1
Length of query: 272
Length of database: 38,378,431
Length adjustment: 105
Effective length of query: 167
Effective length of database: 26,268,361
Effective search space: 4386816287
Effective search space used: 4386816287
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 115 (48.9 bits)