BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0301.0021.p
         (316 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BH3679 [T] COG4753 Response regulator containing CheY-like recei...    70   4e-12
BH2109 [T] COG4753 Response regulator containing CheY-like recei...    67   4e-11
BH0793 [T] COG4753 Response regulator containing CheY-like recei...    67   4e-11
BH1910 [T] COG4753 Response regulator containing CheY-like recei...    67   5e-11
lin1152 [K] COG2207 AraC-type DNA-binding domain-containing prot...    65   1e-10

>BH3679 [T] COG4753 Response regulator containing CheY-like receiver domain
           and AraC-type DNA-binding domain
          Length = 257

 Score = 70.1 bits (170), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 33/102 (32%), Positives = 60/102 (58%)

Query: 201 VRRAVEFLHQNYDRSIQVKEVAAEVSLHPGYLHRIFRAHTGRTLTGYLNMLRIEKARMLL 260
           +  A+ ++  + D+ I +K+VA  V L+P YL  +F+  T  T + YL   R++ A+ LL
Sbjct: 156 IHEALHYIDAHLDQKIGLKDVAKSVHLNPSYLSALFKEKTNMTFSEYLTRKRLQHAKHLL 215

Query: 261 GQSEIPVAEIADYVGISSRQYFHLLFKKYTRCTPVEYRNSLE 302
             ++ P+++IA+  G  + +YF  +FK++   TP +YR   E
Sbjct: 216 VSTDRPISDIAEKCGYQTAKYFIKIFKEHEGMTPTQYRKGTE 257


>BH2109 [T] COG4753 Response regulator containing CheY-like receiver domain
           and AraC-type DNA-binding domain
          Length = 525

 Score = 67.0 bits (162), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 33/95 (34%), Positives = 56/95 (58%)

Query: 207 FLHQNYDRSIQVKEVAAEVSLHPGYLHRIFRAHTGRTLTGYLNMLRIEKARMLLGQSEIP 266
           ++  +Y  +I +K +A+   ++P Y+ ++F+   G     YL  LR+ +A+ LL Q+++ 
Sbjct: 429 YIENHYHENISLKSIASLFYMNPVYMGQLFKKTFGVYFKEYLLKLRMNEAKKLLRQTDMR 488

Query: 267 VAEIADYVGISSRQYFHLLFKKYTRCTPVEYRNSL 301
           V E+A+ VG  S  YF   F+K  + TP EYRN L
Sbjct: 489 VYEVAERVGFGSTDYFVTQFEKINKMTPTEYRNKL 523


>BH0793 [T] COG4753 Response regulator containing CheY-like receiver domain
           and AraC-type DNA-binding domain
          Length = 508

 Score = 67.0 bits (162), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 32/99 (32%), Positives = 55/99 (55%)

Query: 201 VRRAVEFLHQNYDRSIQVKEVAAEVSLHPGYLHRIFRAHTGRTLTGYLNMLRIEKARMLL 260
           ++  ++ +HQ++ + + +K +     ++P YL ++F+   G + T YLN LRI++A+ LL
Sbjct: 405 IQTVLQHIHQHFSQDLSLKTLGHSFHINPIYLGQLFQREVGCSFTKYLNQLRIDRAKKLL 464

Query: 261 GQSEIPVAEIADYVGISSRQYFHLLFKKYTRCTPVEYRN 299
             S     +I   VG     YF+  FKKY   TP E+R 
Sbjct: 465 LNSYDRAGQIGKKVGYGDATYFYKQFKKYEAMTPTEWRK 503


>BH1910 [T] COG4753 Response regulator containing CheY-like receiver domain
           and AraC-type DNA-binding domain
          Length = 506

 Score = 66.6 bits (161), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 31/101 (30%), Positives = 61/101 (60%), Gaps = 1/101 (0%)

Query: 199 LYVRRAVEFLHQNYDRSIQVKEVAAEVSLHPGYLHRIFRAHTGRTLTGYLNMLRIEKARM 258
           L +R+ +  +H++Y ++++++ +A+  + +  YL ++F+ +TG     YL+ +RIE  + 
Sbjct: 397 LLLRKMIALIHKDYAKNLRLETLASVFNYNRAYLGKLFKNYTGEYFNTYLDKVRIENGKR 456

Query: 259 LLGQSEIPVAEIADYVGISSRQYFHLLFKKYTRCTPVEYRN 299
           LL Q    V E+A+ +G ++  YFH  FKKY   +P  +R 
Sbjct: 457 LL-QKGYKVYEVAEKIGYANVDYFHRKFKKYVGVSPSTFRK 496


>lin1152 [K] COG2207 AraC-type DNA-binding domain-containing proteins
          Length = 183

 Score = 65.5 bits (158), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 36/102 (35%), Positives = 58/102 (56%)

Query: 201 VRRAVEFLHQNYDRSIQVKEVAAEVSLHPGYLHRIFRAHTGRTLTGYLNMLRIEKARMLL 260
           +++A+ ++ +N  RSI ++EVA  V L P YL ++F+         Y+N  ++  A+  L
Sbjct: 82  IKQAIRYIKKNIHRSITLEEVANYVYLSPFYLSKLFKNELNINFINYVNEQKMLYAKEQL 141

Query: 261 GQSEIPVAEIADYVGISSRQYFHLLFKKYTRCTPVEYRNSLE 302
            +S+  V  IA  +G S   YF  +FKK    TP EYR+SL+
Sbjct: 142 EKSDWAVHTIAKNLGFSRASYFCKVFKKEFDMTPKEYRDSLK 183


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.323    0.138    0.414 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 19,259,324
Number of extensions: 660525
Number of successful extensions: 3100
Number of sequences better than 1.0e-05: 785
Number of HSP's gapped: 3097
Number of HSP's successfully gapped: 785
Length of query: 316
Length of database: 38,378,431
Length adjustment: 106
Effective length of query: 210
Effective length of database: 26,153,027
Effective search space: 5492135670
Effective search space used: 5492135670
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 116 (49.3 bits)