BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0301.0020.p (671 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BH2275 [NT] COG0840 Methyl-accepting chemotaxis protein 91 4e-18 CAC0250 [NT] COG0840 Methyl-accepting chemotaxis protein 91 8e-18 BS_mcpC [NT] COG0840 Methyl-accepting chemotaxis protein 87 9e-17 BS_tlpC [NT] COG0840 Methyl-accepting chemotaxis protein 87 1e-16 BH0876_2 [NT] COG0840 Methyl-accepting chemotaxis protein 86 2e-16 >BH2275 [NT] COG0840 Methyl-accepting chemotaxis protein Length = 671 Score = 91.3 bits (225), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 115/493 (23%), Positives = 205/493 (41%), Gaps = 40/493 (8%) Query: 197 LTDILSNLHIGLTGEIRILDPDGNIVYGADNKLLGEPSYIHPAAEPAEGQQQSFTASNEQ 256 +DIL ++ + G I + D +G + LLGE + GQ T+ +E Sbjct: 193 FSDILGSIEMNYDGAIFLFDREGTAIVHP--TLLGET----VTEDELYGQVIQATSDSEN 246 Query: 257 GT----SQLVVYQPLDTAKWTLMGYAPVSDFTKSADRLLYITXXXXXXXXXXXXXXXXXX 312 G S ++ +Q + W + + K + + Sbjct: 247 GRTDGESTILFFQTVPLTGWIVGMEFERDNMLKDVNTVRNGIILVSVIALIVGMMIVILV 306 Query: 313 XRLIGRPLGKLAGLMEEGEQGNLQVRTHFKGQDEIGRLGHSFNKMMEQ----ISLLAGQS 368 R I +P+ +L + G+L V G DE+G+L SF +M+ Q I+ + G + Sbjct: 307 ARSITKPISRLGTHVGTVASGDLTVDVRAAGNDEVGQLTESFKEMLVQLRGIITTVKGST 366 Query: 369 ---NRSAAQVLATSEQLVNASSITSTHAREVXXXXXXXXXXXXXXXXXXXXXNRNVERMN 425 +A + A SE+ + +S + R+V R +E+M+ Sbjct: 367 AHVQEAADHLTAISEETIASSEEIALAVRDVAIGSTKQVEHLDEAKRQIDQLARQMEQMS 426 Query: 426 LQITEV----KEINSAMDASAEKVITVSDQGAELMKTLVAQSESTVQMMELIQENSMKLR 481 L +TEV E A + +EKV + +KT ++ + ME + +KL Sbjct: 427 LSMTEVGSLSNETRLAGQSGSEKV--------QHLKTKTLEANTVFDQME---DGLLKLS 475 Query: 482 ESAHLIRSILTPMIAVNKQTNILALNASIEXXXXXXXXXXXXXXXNEIRGLADESNQSIA 541 + I ++ + +++QTN+LALNASIE NE+R LA++S+ Sbjct: 476 DHIMEINEVIHTINHLSEQTNLLALNASIEAARAGEHGKGFAVVANEVRRLAEQSSHETV 535 Query: 542 MVSKITEEISSRIENTVQVVGDTAPLFREQISSVRESSSIFEGVRAEMEQFIGYLNESSA 601 V I +R + + + + EQ SV E+ + F M I +NE+ A Sbjct: 536 RVGDTITGIVNRSKQVIVDMKQARSILSEQSDSVDETENTF----LHMASLIKQMNETLA 591 Query: 602 SITE----LMEYQHQLGESMASVHAVVQQTSASTEEVASMSSQQFTVSEELVALSGKLEK 657 S+ E L E Q + + +V V +Q +A++EEV + + +Q T + + + +L++ Sbjct: 592 SVQEDFGTLAEQNSQFVKRIEAVVEVAEQAAATSEEVNASTDEQVTALQRITEAAEQLQE 651 Query: 658 LAEELKQSLVSFH 670 + EL QS+ F Sbjct: 652 ASHELNQSVRQFQ 664 >CAC0250 [NT] COG0840 Methyl-accepting chemotaxis protein Length = 688 Score = 90.5 bits (223), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 81/335 (24%), Positives = 157/335 (46%), Gaps = 8/335 (2%) Query: 340 HFKGQDEIGRLGHSFNKMMEQISLLAGQSNRSAAQVLATSEQLVNASSITSTHAREVXXX 399 ++ +DE G + +F M + ++ ++ + +V A++E+L S+ T+T + EV Sbjct: 357 YYNKKDETGNMVRAFRVMRDNVAEFINKTTDATERVAASAEELTATSNETATASEEVAKT 416 Query: 400 XXXXXXXXXXXXXXXXXXNRNVERM-NL---QITEVKEINSAMDASAEKVITVSDQGAEL 455 NVE + NL + ++E+N A A K+ ++G + Sbjct: 417 IDEIARGASEQAKDTQIATNNVEDLGNLLEQDLNNIEELNIA----AVKIEKQKEEGFLI 472 Query: 456 MKTLVAQSESTVQMMELIQENSMKLRESAHLIRSILTPMIAVNKQTNILALNASIEXXXX 515 ++ L+ +++ I M ESA I T + ++ QTN+LALNA+IE Sbjct: 473 LRDLIDKTQKNNDAANNIYNIIMSNNESAEKIEIASTMIESIADQTNLLALNAAIEAARA 532 Query: 516 XXXXXXXXXXXNEIRGLADESNQSIAMVSKITEEISSRIENTVQVVGDTAPLFREQISSV 575 +EIR LA++SN + I E+ ++ E+ V ++ +T + +EQ SSV Sbjct: 533 GEAGKGFAVVADEIRKLAEQSNSFTNDIKTIINELKTKSESAVNLMEETKQIVKEQASSV 592 Query: 576 RESSSIFEGVRAEMEQFIGYLNESSASITELMEYQHQLGESMASVHAVVQQTSASTEEVA 635 + F G+ E++ +N+ + S + + ++++ E M ++ A+ ++ +A TEE A Sbjct: 593 EATEGKFSGIAEEIDSIKTIINKFNQSGKLMGDNKNKIIELMQNLSAISEENAAGTEETA 652 Query: 636 SMSSQQFTVSEELVALSGKLEKLAEELKQSLVSFH 670 + +Q +E+ L +AEEL + F Sbjct: 653 ASIEEQVATIQEIAKSGESLASIAEELSVVISKFK 687 >BS_mcpC [NT] COG0840 Methyl-accepting chemotaxis protein Length = 654 Score = 87.0 bits (214), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 98/458 (21%), Positives = 190/458 (41%), Gaps = 18/458 (3%) Query: 191 EIKGQALTDILSNLHIGLTGEIRILDPDGNIVYGADNKLLGEPSYIHPAAEPAEGQQQSF 250 ++K A+ +++ + G + D GN LL PS + ++ Q Sbjct: 180 DLKLSAIQSLVNKQKVPYKGFAFLADASGN--------LLAHPS--NQGKNISKDQTLQT 229 Query: 251 TASNEQG----TSQLVVYQPLDTAKWTLMGYAPVSDFTKSADRLLYITXXXXXXXXXXXX 306 AS ++G ++VVYQ + W + +D++ Sbjct: 230 IASEKKGIQDVNGKMVVYQTIGETGWKVGTQFDTDQLMWISDKMNRANLWISLIALIITI 289 Query: 307 XXXXXXXRLIGRPLGKLAGLMEEGEQGNLQVRTHFKGQDEIGRLGHSFNKMMEQISLLAG 366 + I P+ +L + G+L VR K +DE+G L FN M+E + + Sbjct: 290 ILSYFLAKTITGPIQQLIVKTKAVSAGDLTVRAESKSKDEVGILTRDFNLMVENMKEMVE 349 Query: 367 QSNRSAAQVLATSEQLVNASSITSTHAREVXXXXXXXXXXXXXXXXXXXXXNRNVERMNL 426 Q S+ +V TSEQL ++ T+ + ++ N E ++ Sbjct: 350 QVRLSSGKVSDTSEQLTAVAAETNERSGQIAKAIEEVAAGASEQASEVETINEKSESLST 409 Query: 427 QITEVKEINSAMDASAEKVITVSDQGAELMKTLVAQSESTVQMMELIQENSM--KLRESA 484 +I ++ E + ++ S +G + L+ +S ME +E +M L Sbjct: 410 KIRQIAEEAGGIKERSKSSEDASYKGLHALGQLLMKSNEA--NMETKKEETMLLDLENQT 467 Query: 485 HLIRSILTPMIAVNKQTNILALNASIEXXXXXXXXXXXXXXXNEIRGLADESNQSIAMVS 544 I ++T + ++ QTN+LALN SIE +E+R LA++S S +S Sbjct: 468 KNIEEVVTAISNISDQTNLLALNRSIEAARAGESGRGFAVVADEVRKLAEQSALSTKHIS 527 Query: 545 KITEEISSRIENTVQVVGDTAPLFREQISSVRESSSIFEGVRAEMEQFIGYLNESSASIT 604 + + I + + + + + EQ S++ E+ + + AEM+ + ++ A I Sbjct: 528 ETVKLIQLETKEASHAMVEASRMNDEQNSAIHETGEVLNTITAEMQSLVQGIDHIYAEIQ 587 Query: 605 ELMEYQHQLGESMASVHAVVQQTSASTEEVASMSSQQF 642 + E Q + E++ S+ A+ Q+++A+ EEV + + +Q Sbjct: 588 RMSEEQLAISEAIQSISAISQESAAAAEEVNASTDEQL 625 >BS_tlpC [NT] COG0840 Methyl-accepting chemotaxis protein Length = 83 Score = 86.7 bits (213), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 0/349 (0%), Positives = 0/349 (0%) Query: 314 RLIGRPLGKLAGLMEEGEQGNLQVRTHFKGQDEIGRLGHSFNKMMEQISLLAGQSNRSAA 373 Sbjct: 209 268 Query: 374 QVLATSEQLVNASSITSTHAREVXXXXXXXXXXXXXXXXXXXXXNRNVERMNLQITEVKE 433 Sbjct: 269 328 Query: 434 INSAMDASAEKVITVSDQGAELMKTLVAQSESTVQMMELIQENSMKLRESAHLIRSILTP 493 Sbjct: 329 388 Query: 494 MIAVNKQTNILALNASIEXXXXXXXXXXXXXXXNEIRGLADESNQSIAMVSKITEEISSR 553 Sbjct: 389 448 Query: 554 IENTVQVVGDTAPLFREQISSVRESSSIFEGVRAEMEQFIGYLNESSASITELMEYQHQL 613 Sbjct: 449 508 Query: 614 GESMASVHAVVQQTSASTEEVASMSSQQFTVSEELVALSGKLEKLAEEL 662 Sbjct: 509 557 >BH0876_2 [NT] COG0840 Methyl-accepting chemotaxis protein Length = 359 Score = 85.9 bits (211), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 88/369 (23%), Positives = 178/369 (48%), Gaps = 25/369 (6%) Query: 314 RLIGRPLGKLAGLMEEGEQGNLQV-RTHFKGQDEIGRLGHSFNKMMEQISLLAGQSNRSA 372 ++I +PL +L + G+L R K +DEIG+L SF M E + L + ++A Sbjct: 1 KMITKPLARLTKVARHVADGDLTTERVKIKNRDEIGQLNESFEAMKENLRGLIQRILQNA 60 Query: 373 AQVLATSEQLVNASSITSTHAREVXXXXXXXXXXXXXXXXXXXXXNRNVERMNLQITEVK 432 QV +SEQL ++ TS+ + + +E MN +TE+ Sbjct: 61 DQVAVSSEQLSASAEQTSSATEQTTSAIESISRGADMQTSAAQTSVKTLEEMNQIVTEMT 120 Query: 433 EINSAMDASAEKVITVSDQGAELMKTLVAQSESTVQMMELIQENSMK--------LRESA 484 + ++++A +T +++G L+K TV+ M+ I E S+K L + + Sbjct: 121 DGAKQIESNANLTLTYANEGDTLVK-------ETVENMQSIDE-SVKGSDQAIQTLSKRS 172 Query: 485 HLIRSILTPMIAVNKQTNILALNASIEXXXXXXXXXXXXXXXNEIRGLADESNQSIAMVS 544 I IL + ++ +QTN+LALNA+IE E+R LA+ES+QS + Sbjct: 173 EDIVEILDVIQSIAEQTNLLALNAAIEAARAGEHGKGFAVVAEEVRKLAEESSQSTKKIH 232 Query: 545 KITEEISSRIENTVQVVGDTAPLFREQIS----SVRESSSIFEGVRAEMEQFIGYLNESS 600 + +E+ N+V+ +G L +E++S + ++S F + A ++ + + Sbjct: 233 DLIDEMVKETNNSVEKMG----LVKEEVSVGLKTAAQTSEKFHSIVASIQGVTSQVEAMN 288 Query: 601 ASITELMEYQHQLGESMASVHAVVQQTSASTEEVASMSSQQFTVSEELVALSGKLEKLAE 660 E+ E ++ S+ ++ +V ++++ + V++++ + +E+ A + +L ++AE Sbjct: 289 RVTREVAEKSTEVATSVQNMASVAEESAEQSSSVSAVAEETLASMQEVTASANQLTEMAE 348 Query: 661 ELKQSLVSF 669 L++++ F Sbjct: 349 TLQEAIKQF 357 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.314 0.128 0.337 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 36,503,157 Number of extensions: 1308007 Number of successful extensions: 6650 Number of sequences better than 1.0e-05: 766 Number of HSP's gapped: 6421 Number of HSP's successfully gapped: 767 Length of query: 671 Length of database: 38,378,431 Length adjustment: 113 Effective length of query: 558 Effective length of database: 25,345,689 Effective search space: 14142894462 Effective search space used: 14142894462 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 119 (50.4 bits)