BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0301.0019.p (282 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPy1296 [G] COG3833 ABC-type maltose transport systems, permease... 246 3e-65 YPO0854 [G] COG3833 ABC-type maltose transport systems, permease... 235 6e-62 BH2021 [G] COG3833 ABC-type maltose transport systems, permease ... 234 1e-61 BS_yvfM [G] COG3833 ABC-type maltose transport systems, permease... 233 4e-61 BH2924 [G] COG3833 ABC-type maltose transport systems, permease ... 219 4e-57 >SPy1296 [G] COG3833 ABC-type maltose transport systems, permease component Length = 278 Score = 246 bits (628), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 129/273 (47%), Positives = 180/273 (65%), Gaps = 3/273 (1%) Query: 11 FRLGFSYXXXXXXXXXXXYPALWILLSSFRPGKSLYSKTLIPEHFTLDHYKELFTSPVYM 70 F+LG Y +P W++L+SFR + Y IP+ FTL+HY LFT+ + Sbjct: 7 FQLGLVYATLIILSIIWLFPIAWVILTSFRSEGTAYVNYFIPKTFTLNHYINLFTNETFP 66 Query: 71 FGTWYANTLKIAVFSMLIGVVLTLLTSYALSRFRFKTRKTTMSVLLILGMFPGFMSMIAI 130 FG W+ NTL +A F+ +I +T+ +Y+LSR +FK R + + LIL MFPGFMSMIAI Sbjct: 67 FGKWFMNTLIVATFTCIISTFITVAIAYSLSRIKFKFRNGFLKLALILNMFPGFMSMIAI 126 Query: 131 YLLLKEFNLLDTHLALIIVYAAGAPLGGTLIAKGFLDTVPRSLDEAARIDGASNFGIFAR 190 Y +LK L T AL++VY++GA L G IAKGF DT+P SLDE+A IDGA+ IF + Sbjct: 127 YYILKALGLTQTLTALVLVYSSGAAL-GFYIAKGFFDTIPYSLDESAMIDGATRMDIFFK 185 Query: 191 IILPLSRPMITYMALTQFVGPWVDFIFAKLIL-RTKDNWTVAVGMWDMVNTMQNSN-FTL 248 I LPL++P+I Y AL F+GPW+DFIFA++IL +TVA+G++ M+ +N F Sbjct: 186 ITLPLAKPIIVYTALLAFMGPWIDFIFAQVILGDATSKYTVAIGLFSMLQPDTINNWFMA 245 Query: 249 FAAGAVLISVPIMILFAFLQRLLVDGLTAGASK 281 F AG+VLI+VPI +LF F+Q+ V+G+T G+ K Sbjct: 246 FTAGSVLIAVPITLLFMFMQKYYVEGITGGSVK 278 >YPO0854 [G] COG3833 ABC-type maltose transport systems, permease component Length = 283 Score = 235 bits (600), Expect = 6e-62, Method: Compositional matrix adjust. Identities = 117/278 (42%), Positives = 182/278 (65%), Gaps = 3/278 (1%) Query: 6 KLANFFRLGFSYXXXXXXXXXXXYPALWILLSSFRPGKSLYSKTLIPEHFTLDHYKELFT 65 K + RL S+ YP +W + +S G SL S ++IPE+ + HY +LF Sbjct: 8 KQEKWIRLSLSWLVIILVSVIIIYPLIWTVGASLNAGNSLLSTSIIPENLSFQHYADLFN 67 Query: 66 SPV-YMFGTWYANTLKIAVFSMLIGVVLTLLTSYALSRFRFKTRKTTMSVLLILGMFPGF 124 V YM TWY N++KI+ +M++ ++ T+YA SRFRFK R+ + + L+L M P F Sbjct: 68 GEVNYM--TWYWNSMKISFLTMVLTLISVSFTAYAFSRFRFKGRQNGLMLFLLLQMIPQF 125 Query: 125 MSMIAIYLLLKEFNLLDTHLALIIVYAAGAPLGGTLIAKGFLDTVPRSLDEAARIDGASN 184 ++IAI++L + L+++H+AL+++Y AG T + KG+LD +P+ LDE+AR+DGASN Sbjct: 126 SALIAIFVLSQLLGLINSHMALVLIYVAGMIPMNTYLMKGYLDAIPKDLDESARMDGASN 185 Query: 185 FGIFARIILPLSRPMITYMALTQFVGPWVDFIFAKLILRTKDNWTVAVGMWDMVNTMQNS 244 F IF II+PLS+P++ +AL F GP DFI + ILRT D +T+ +G++++V + Sbjct: 186 FRIFIEIIMPLSKPIVAVVALFSFTGPLGDFILSSTILRTPDKYTLPIGLYNLVAQKMGA 245 Query: 245 NFTLFAAGAVLISVPIMILFAFLQRLLVDGLTAGASKG 282 ++T +AAGAVLI+VP+ IL+ LQ+ V GLT+G++KG Sbjct: 246 SYTTYAAGAVLIAVPVAILYLALQKYFVSGLTSGSTKG 283 >BH2021 [G] COG3833 ABC-type maltose transport systems, permease component Length = 283 Score = 234 bits (597), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 116/255 (45%), Positives = 176/255 (69%), Gaps = 1/255 (0%) Query: 29 YPALWILLSSFRPGKSLYSKTLIPEHFTLDHYKELFTSP-VYMFGTWYANTLKIAVFSML 87 YP LW + +SF PG SL S ++IPE+ +L HY+ELF + WY N+LKI++F+M+ Sbjct: 29 YPLLWTVGASFNPGNSLISTSIIPENPSLIHYQELFAGKGSLQYVQWYKNSLKISLFTMV 88 Query: 88 IGVVLTLLTSYALSRFRFKTRKTTMSVLLILGMFPGFMSMIAIYLLLKEFNLLDTHLALI 147 ++ T+YA SRFRFK RK +++ L+L M P F ++IA+++L + L+++H LI Sbjct: 89 GTMISVSFTAYAFSRFRFKGRKHGLTLFLLLQMIPQFSALIALFVLAQMLGLMNSHWLLI 148 Query: 148 IVYAAGAPLGGTLIAKGFLDTVPRSLDEAARIDGASNFGIFARIILPLSRPMITYMALTQ 207 ++Y G T + KG++D++P LDE+ARIDGAS+ IF +II+PLS+PM+ +A+ Sbjct: 149 MLYIGGLIPMNTYLMKGYMDSIPIDLDESARIDGASHTRIFLQIIMPLSKPMLAVVAMNG 208 Query: 208 FVGPWVDFIFAKLILRTKDNWTVAVGMWDMVNTMQNSNFTLFAAGAVLISVPIMILFAFL 267 F GP DFI A ILRT D +T+ +G++++VN + +++T FAAGA+LIS+P+ +F L Sbjct: 209 FTGPLGDFILASTILRTPDAYTLPIGLFNLVNDVMGASYTKFAAGAILISIPVAFIFVLL 268 Query: 268 QRLLVDGLTAGASKG 282 QR V GLTAG +KG Sbjct: 269 QRHFVSGLTAGGTKG 283 >BS_yvfM [G] COG3833 ABC-type maltose transport systems, permease component Length = 283 Score = 233 bits (593), Expect = 4e-61, Method: Compositional matrix adjust. Identities = 120/283 (42%), Positives = 186/283 (65%), Gaps = 1/283 (0%) Query: 1 MIIGRKLANFFRLGFSYXXXXXXXXXXXYPALWILLSSFRPGKSLYSKTLIPEHFTLDHY 60 M+ K+ + RL FSY YP LW +SF PG SL S ++IP+H T DHY Sbjct: 1 MLADMKVRRYIRLLFSYLLLAFMAVIIVYPLLWTAGASFNPGNSLISTSIIPKHPTFDHY 60 Query: 61 KELFTSPVYM-FGTWYANTLKIAVFSMLIGVVLTLLTSYALSRFRFKTRKTTMSVLLILG 119 KELF + + WY N++KI++F+M ++ T+YA SRFRFK RK +++ L+L Sbjct: 61 KELFAGKESLQYVQWYVNSMKISLFTMAGSLLCVTFTAYAFSRFRFKGRKYALTLFLLLQ 120 Query: 120 MFPGFMSMIAIYLLLKEFNLLDTHLALIIVYAAGAPLGGTLIAKGFLDTVPRSLDEAARI 179 M P F ++IA+++L + ++++H LI++Y G T + KG++D++P LDE+A+I Sbjct: 121 MIPQFSALIALFVLAQILGMINSHWLLILLYIGGLIPMNTYLMKGYMDSIPMDLDESAKI 180 Query: 180 DGASNFGIFARIILPLSRPMITYMALTQFVGPWVDFIFAKLILRTKDNWTVAVGMWDMVN 239 DGAS+ IF +IILPLS+PM +A+ F GP DF+ + ILRT +++T+ VG++++VN Sbjct: 181 DGASSTRIFFQIILPLSKPMAAVVAMNGFTGPLGDFVLSSTILRTPESYTLPVGLFNLVN 240 Query: 240 TMQNSNFTLFAAGAVLISVPIMILFAFLQRLLVDGLTAGASKG 282 + +++T FAAGA+LIS+P+ ++F LQ+ V GLTAG +KG Sbjct: 241 DVMGASYTTFAAGALLISIPVAVIFIMLQKNFVSGLTAGGTKG 283 >BH2924 [G] COG3833 ABC-type maltose transport systems, permease component Length = 280 Score = 219 bits (557), Expect = 4e-57, Method: Compositional matrix adjust. Identities = 116/254 (45%), Positives = 169/254 (66%) Query: 29 YPALWILLSSFRPGKSLYSKTLIPEHFTLDHYKELFTSPVYMFGTWYANTLKIAVFSMLI 88 YP LW + S PG SL+S +IPE + HY+ LF P + WY NTL +A + + Sbjct: 27 YPLLWTVGLSLNPGTSLFSSRMIPETISFRHYEWLFFDPRSNYLQWYKNTLIVASVTSVC 86 Query: 89 GVVLTLLTSYALSRFRFKTRKTTMSVLLILGMFPGFMSMIAIYLLLKEFNLLDTHLALII 148 L LT+YA SR+RF R + L+L MFP M+M+A+Y+LL NLLDT L LI+ Sbjct: 87 STFLVALTAYAFSRYRFVGRTYGLYGFLLLQMFPVLMAMVALYILLNTVNLLDTLLGLIL 146 Query: 149 VYAAGAPLGGTLIAKGFLDTVPRSLDEAARIDGASNFGIFARIILPLSRPMITYMALTQF 208 +Y + + KG+ DT+PR LDE+A++DGA +F IF I+LPL++P++ +AL F Sbjct: 147 IYVGTSIPMNAFLVKGYFDTIPRELDESAKLDGAGHFRIFFTIMLPLAKPILAVVALFNF 206 Query: 209 VGPWVDFIFAKLILRTKDNWTVAVGMWDMVNTMQNSNFTLFAAGAVLISVPIMILFAFLQ 268 + P++DFI ++ILR+ +N+T+A+G+++ VN +NFT FAAGA+LI++PI +F FLQ Sbjct: 207 MSPFMDFILPRIILRSPENYTLALGLFNFVNDQFANNFTRFAAGAILIAIPIATVFLFLQ 266 Query: 269 RLLVDGLTAGASKG 282 R L+ GLT GA+KG Sbjct: 267 RYLISGLTTGATKG 280 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.330 0.143 0.434 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 18,222,175 Number of extensions: 674489 Number of successful extensions: 2765 Number of sequences better than 1.0e-05: 172 Number of HSP's gapped: 2568 Number of HSP's successfully gapped: 172 Length of query: 282 Length of database: 38,378,431 Length adjustment: 105 Effective length of query: 177 Effective length of database: 26,268,361 Effective search space: 4649499897 Effective search space used: 4649499897 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.9 bits) S2: 115 (48.9 bits)