BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0301.0010.p (251 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value CAC2614 [R] COG0637 Predicted phosphatase/phosphohexomutase 162 4e-40 all1058_2 [R] COG0637 Predicted phosphatase/phosphohexomutase 157 1e-38 L0001 [R] COG0637 Predicted phosphatase/phosphohexomutase 152 7e-37 NMA2097 [R] COG0637 Predicted phosphatase/phosphohexomutase 149 4e-36 BS_yvdM [R] COG0637 Predicted phosphatase/phosphohexomutase 143 3e-34 >CAC2614 [R] COG0637 Predicted phosphatase/phosphohexomutase Length = 346 Score = 162 bits (411), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 11/173 (6%), Positives = 21/173 (12%) Query: 20 IKACLFDLDGVLVDTAKYHYIAWRELAEQLGFVFTEKDNERLKGVSRTASLNILLEIGGL 79 V + + + + + Sbjct: 3 YHRIPHSSLEVSTLGLGTMTFGEQNSEADAHAQLDYAVAQGINLIDVAEMYPVPPRPETQ 62 Query: 80 TLDETRKAELAEQKNNRYVEYIAKMDSSEILPGALDFLKECRAQGIKTALGSASKNAMLI 139 L ET + +R IA S + L Sbjct: 63 GLTETYVGNWLAKHGSREKLIIASKVSGPSRNNDKGIRPDQALDRKNIREALHDSLKRLQ 122 Query: 140 LNNTGLTPYFDAIIDGTHTSAAKPDPEVFLLGARATYTEPGQCVVFEDAEAGI 192 + L T + Sbjct: 123 TDYLDLYQVHWPQRPTNCFGKLGYSWTDSAPAVSLLDTLDALAEYQRAGKIRY 175 >all1058_2 [R] COG0637 Predicted phosphatase/phosphohexomutase Length = 346 Score = 157 bits (398), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 8/174 (4%), Positives = 29/174 (16%), Gaps = 2/174 (1%) Query: 19 EIKACLFDLDGVLVDTAKYHYIAWRELAEQLGFVFTEKDNERLKGVSRTASLNILLEIGG 78 I ++ + + T + A + + Sbjct: 5 RIPHSSLEVSTLGLGTMTFGEQNSEADAHAQLDYAVAQGINLIDVAEMYPVPPRP--ETQ 62 Query: 79 LTLDETRKAELAEQKNNRYVEYIAKMDSSEILPGALDFLKECRAQGIKTALGSASKNAML 138 + LA+ + + +K+ + + S + Sbjct: 63 GLTETYVGNWLAKHGSREKLIIASKVSGPSRNNDKGIRPDQALDRKNIREALHDSLKRLQ 122 Query: 139 ILNNTGLTPYFDAIIDGTHTSAAKPDPEVFLLGARATYTEPGQCVVFEDAEAGI 192 ++ + + + I Sbjct: 123 TDYLDLYQVHWPQRPTNCFGKLGYSWTDSAPAVSLLDTLDALAEYQRAGKIRYI 176 >L0001 [R] COG0637 Predicted phosphatase/phosphohexomutase Length = 346 Score = 152 bits (383), Expect = 7e-37, Method: Compositional matrix adjust. Identities = 11/173 (6%), Positives = 25/173 (14%), Gaps = 1/173 (0%) Query: 21 KACLFDLDGVLVDTAKYHYIAWRELAEQLGFVFTEKD-NERLKGVSRTASLNILLEIGGL 79 + + + +E + + + + + Sbjct: 3 YHRIPHSSLEVSTLGLGTMTFGEQNSEADAHAQLDYAVAQGINLIDVAEMYPVPPRPETQ 62 Query: 80 TLDETRKAELAEQKNNRYVEYIAKMDSSEILPGALDFLKECRAQGIKTALGSASKNAMLI 139 L ET + +R IA S + L Sbjct: 63 GLTETYVGNWLAKHGSREKLIIASKVSGPSRNNDKGIRPDQALDRKNIREALHDSLKRLQ 122 Query: 140 LNNTGLTPYFDAIIDGTHTSAAKPDPEVFLLGARATYTEPGQCVVFEDAEAGI 192 + L T + Sbjct: 123 TDYLDLYQVHWPQRPTNCFGKLGYSWTDSAPAVSLLDTLDALAEYQRAGKIRY 175 >NMA2097 [R] COG0637 Predicted phosphatase/phosphohexomutase Length = 346 Score = 149 bits (376), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 11/166 (6%), Positives = 20/166 (12%) Query: 22 ACLFDLDGVLVDTAKYHYIAWRELAEQLGFVFTEKDNERLKGVSRTASLNILLEIGGLTL 81 V + + + + + L Sbjct: 5 RIPHSSLEVSTLGLGTMTFGEQNSEADAHAQLDYAVAQGINLIDVAEMYPVPPRPETQGL 64 Query: 82 DETRKAELAEQKNNRYVEYIAKMDSSEILPGALDFLKECRAQGIKTALGSASKNAMLILN 141 ET + +R IA S + L + Sbjct: 65 TETYVGNWLAKHGSREKLIIASKVSGPSRNNDKGIRPDQALDRKNIREALHDSLKRLQTD 124 Query: 142 NTGLTPYFDAIIDGTHTSAAKPDPEVFLLGARATYTEPGQCVVFED 187 L T Sbjct: 125 YLDLYQVHWPQRPTNCFGKLGYSWTDSAPAVSLLDTLDALAEYQRA 170 >BS_yvdM [R] COG0637 Predicted phosphatase/phosphohexomutase Length = 346 Score = 143 bits (360), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 12/175 (6%), Positives = 25/175 (14%), Gaps = 2/175 (1%) Query: 20 IKACLFDLDGVLVDTAKYHYIAWRELAEQLGFVFTEKDNERLKGVSRTASLNILLEIGGL 79 ++ + V T + + E + + + Sbjct: 1 MQYHRIPHSSLEVSTLGLGTMTFGEQNSEADAHAQLDYAVAQGINLIDVAEMYPVPPRPE 60 Query: 80 TLDET--RKAELAEQKNNRYVEYIAKMDSSEILPGALDFLKECRAQGIKTALGSASKNAM 137 T T + +R IA S + Sbjct: 61 TQGLTETYVGNWLAKHGSREKLIIASKVSGPSRNNDKGIRPDQALDRKNIREALHDSLKR 120 Query: 138 LILNNTGLTPYFDAIIDGTHTSAAKPDPEVFLLGARATYTEPGQCVVFEDAEAGI 192 L + L T + Sbjct: 121 LQTDYLDLYQVHWPQRPTNCFGKLGYSWTDSAPAVSLLDTLDALAEYQRAGKIRY 175 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.321 0.136 0.403 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 16,796,934 Number of extensions: 615119 Number of successful extensions: 1581 Number of sequences better than 1.0e-05: 63 Number of HSP's gapped: 1536 Number of HSP's successfully gapped: 63 Length of query: 251 Length of database: 38,378,431 Length adjustment: 104 Effective length of query: 147 Effective length of database: 26,383,695 Effective search space: 3878403165 Effective search space used: 3878403165 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 114 (48.5 bits)