BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0298.0005.p
         (137 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BMEII1017 [K] COG0789 Predicted transcriptional regulators             60   7e-10
Rv3334 [K] COG0789 Predicted transcriptional regulators                60   9e-10
MT3438 [K] COG0789 Predicted transcriptional regulators                60   9e-10
BH3858 [K] COG0789 Predicted transcriptional regulators                59   2e-09
RSp0320 [K] COG0789 Predicted transcriptional regulators               59   2e-09

>BMEII1017 [K] COG0789 Predicted transcriptional regulators
          Length = 154

 Score = 60.5 bits (145), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 36/70 (51%), Positives = 41/70 (58%), Gaps = 2/70 (2%)

Query: 1  MKIQELADKMGLTIHTIRFYEKEGLLDDRHVRRESNNYRNYSEEAVGRLKLIKKFQSIGC 60
          MKI ELA + GL    IRFYE  GLL  + V R SN YR Y EEAV  L LI   Q  G 
Sbjct: 1  MKIGELAKRSGLAASRIRFYESIGLL--KTVDRRSNGYRTYPEEAVLVLHLIATAQKAGF 58

Query: 61 SLAELKEVLQ 70
          SL E++ +L 
Sbjct: 59 SLDEIRTLLP 68


>Rv3334 [K] COG0789 Predicted transcriptional regulators
          Length = 146

 Score = 60.1 bits (144), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 30/73 (41%), Positives = 43/73 (58%), Gaps = 2/73 (2%)

Query: 1  MKIQELADKMGLTIHTIRFYEKEGLLDDRHVRRESNNYRNYSEEAVGRLKLIKKFQSIGC 60
          MKI E+A     +  T+RFYE  GLL      R ++ YRNY  E V RL+ I + Q+ G 
Sbjct: 1  MKISEVAALTNTSTKTLRFYENSGLLPPP--ARTASGYRNYGPEIVDRLRFIHRGQAAGL 58

Query: 61 SLAELKEVLQDHD 73
          +L E++++L  HD
Sbjct: 59 ALQEVRQILAIHD 71


>MT3438 [K] COG0789 Predicted transcriptional regulators
          Length = 146

 Score = 60.1 bits (144), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 30/73 (41%), Positives = 43/73 (58%), Gaps = 2/73 (2%)

Query: 1  MKIQELADKMGLTIHTIRFYEKEGLLDDRHVRRESNNYRNYSEEAVGRLKLIKKFQSIGC 60
          MKI E+A     +  T+RFYE  GLL      R ++ YRNY  E V RL+ I + Q+ G 
Sbjct: 1  MKISEVAALTNTSTKTLRFYENSGLLPPP--ARTASGYRNYGPEIVDRLRFIHRGQAAGL 58

Query: 61 SLAELKEVLQDHD 73
          +L E++++L  HD
Sbjct: 59 ALQEVRQILAIHD 71


>BH3858 [K] COG0789 Predicted transcriptional regulators
          Length = 119

 Score = 59.3 bits (142), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 29/65 (44%), Positives = 44/65 (67%)

Query: 1  MKIQELADKMGLTIHTIRFYEKEGLLDDRHVRRESNNYRNYSEEAVGRLKLIKKFQSIGC 60
          MKI +++ K GL I T+RFYE++ L+ D  + R+ NNYR Y+E+ V  L+ +K   SIG 
Sbjct: 1  MKINDVSQKTGLPISTLRFYERKNLIPDTLLTRDVNNYRIYNEKVVDYLEDVKTLLSIGF 60

Query: 61 SLAEL 65
          +L +L
Sbjct: 61 TLNDL 65


>RSp0320 [K] COG0789 Predicted transcriptional regulators
          Length = 170

 Score = 59.3 bits (142), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 30/70 (42%), Positives = 45/70 (64%), Gaps = 2/70 (2%)

Query: 1  MKIQELADKMGLTIHTIRFYEKEGLLDDRHVRRESNNYRNYSEEAVGRLKLIKKFQSIGC 60
          MKI ELA + G++I TIRFYE +GLL      R +NNYR Y+ E   +L  I K +S+  
Sbjct: 13 MKIGELAQRTGVSIETIRFYEAQGLLPP--PARAANNYRVYTPEHAEQLAFIAKCRSLDM 70

Query: 61 SLAELKEVLQ 70
          + AE++ +++
Sbjct: 71 AHAEIRRLME 80


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.318    0.134    0.389 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 8,374,837
Number of extensions: 269343
Number of successful extensions: 1305
Number of sequences better than 1.0e-05: 31
Number of HSP's gapped: 1343
Number of HSP's successfully gapped: 31
Length of query: 137
Length of database: 38,378,431
Length adjustment: 95
Effective length of query: 42
Effective length of database: 27,421,701
Effective search space: 1151711442
Effective search space used: 1151711442
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 110 (47.0 bits)