BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0298.0001.p
         (122 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ZyjbR [S] COG2315 Uncharacterized protein conserved in bacteria        86   1e-17
BS_yjbR [E] COG0665 Glycine/D-amino acid oxidases (deaminating)        86   1e-17
yjbR [S] COG2315 Uncharacterized protein conserved in bacteria         86   1e-17
ZyjbR [S] COG2315 Uncharacterized protein conserved in bacteria        86   1e-17
ECs5039 [S] COG2315 Uncharacterized protein conserved in bacteria      86   1e-17

>ZyjbR [S] COG2315 Uncharacterized protein conserved in bacteria
          Length = 118

 Score = 85.9 bits (211), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 41/115 (35%), Positives = 70/115 (60%), Gaps = 5/115 (4%)

Query: 8   IIDFCLEKKGAVPTHPFGPDWLV--IKVEGKMFALIFENIASQPVINLKCDPVIAANLRE 65
           ++ +C+ K GA        DW    IKVE  +FA++ E + ++P ++LK  P +A  LR+
Sbjct: 6   LLQYCMAKPGA--EQSVHNDWKATQIKVEDVLFAMVKE-VENRPAVSLKTSPELAELLRQ 62

Query: 66  QYDNVRPGYHMNKKHWNSITLDGSVPEQDIFLMIGHSYDLVVKKLPKSLRESIAE 120
           Q+ +VRP  H+NK HW+++ LDGS+P+  I+ ++  SY   V  LP+  R+ + +
Sbjct: 63  QHSDVRPSRHLNKAHWSTVYLDGSLPDSQIYYLVDASYQQAVNLLPEEKRKLLVQ 117


>BS_yjbR [E] COG0665 Glycine/D-amino acid oxidases (deaminating)
          Length = 118

 Score = 85.9 bits (211), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 41/115 (35%), Positives = 70/115 (60%), Gaps = 5/115 (4%)

Query: 8   IIDFCLEKKGAVPTHPFGPDWLV--IKVEGKMFALIFENIASQPVINLKCDPVIAANLRE 65
           ++ +C+ K GA        DW    IKVE  +FA++ E + ++P ++LK  P +A  LR+
Sbjct: 6   LLQYCMAKPGA--EQSVHNDWKATQIKVEDVLFAMVKE-VENRPAVSLKTSPELAELLRQ 62

Query: 66  QYDNVRPGYHMNKKHWNSITLDGSVPEQDIFLMIGHSYDLVVKKLPKSLRESIAE 120
           Q+ +VRP  H+NK HW+++ LDGS+P+  I+ ++  SY   V  LP+  R+ + +
Sbjct: 63  QHSDVRPSRHLNKAHWSTVYLDGSLPDSQIYYLVDASYQQAVNLLPEEKRKLLVQ 117


>yjbR [S] COG2315 Uncharacterized protein conserved in bacteria
          Length = 118

 Score = 85.9 bits (211), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 41/115 (35%), Positives = 70/115 (60%), Gaps = 5/115 (4%)

Query: 8   IIDFCLEKKGAVPTHPFGPDWLV--IKVEGKMFALIFENIASQPVINLKCDPVIAANLRE 65
           ++ +C+ K GA        DW    IKVE  +FA++ E + ++P ++LK  P +A  LR+
Sbjct: 6   LLQYCMAKPGA--EQSVHNDWKATQIKVEDVLFAMVKE-VENRPAVSLKTSPELAELLRQ 62

Query: 66  QYDNVRPGYHMNKKHWNSITLDGSVPEQDIFLMIGHSYDLVVKKLPKSLRESIAE 120
           Q+ +VRP  H+NK HW+++ LDGS+P+  I+ ++  SY   V  LP+  R+ + +
Sbjct: 63  QHSDVRPSRHLNKAHWSTVYLDGSLPDSQIYYLVDASYQQAVNLLPEEKRKLLVQ 117



 Score = 85.9 bits (211), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 41/115 (35%), Positives = 70/115 (60%), Gaps = 5/115 (4%)

Query: 8   IIDFCLEKKGAVPTHPFGPDWLV--IKVEGKMFALIFENIASQPVINLKCDPVIAANLRE 65
           ++ +C+ K GA        DW    IKVE  +FA++ E + ++P ++LK  P +A  LR+
Sbjct: 6   LLQYCMAKPGA--EQSVHNDWKATQIKVEDVLFAMVKE-VENRPAVSLKTSPELAELLRQ 62

Query: 66  QYDNVRPGYHMNKKHWNSITLDGSVPEQDIFLMIGHSYDLVVKKLPKSLRESIAE 120
           Q+ +VRP  H+NK HW+++ LDGS+P+  I+ ++  SY   V  LP+  R+ + +
Sbjct: 63  QHSDVRPSRHLNKAHWSTVYLDGSLPDSQIYYLVDASYQQAVNLLPEEKRKLLVQ 117


>ECs5039 [S] COG2315 Uncharacterized protein conserved in bacteria
          Length = 118

 Score = 85.9 bits (211), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 41/115 (35%), Positives = 70/115 (60%), Gaps = 5/115 (4%)

Query: 8   IIDFCLEKKGAVPTHPFGPDWLV--IKVEGKMFALIFENIASQPVINLKCDPVIAANLRE 65
           ++ +C+ K GA        DW    IKVE  +FA++ E + ++P ++LK  P +A  LR+
Sbjct: 6   LLQYCMAKPGA--EQSVHNDWKATQIKVEDVLFAMVKE-VENRPAVSLKTSPELAELLRQ 62

Query: 66  QYDNVRPGYHMNKKHWNSITLDGSVPEQDIFLMIGHSYDLVVKKLPKSLRESIAE 120
           Q+ +VRP  H+NK HW+++ LDGS+P+  I+ ++  SY   V  LP+  R+ + +
Sbjct: 63  QHSDVRPSRHLNKAHWSTVYLDGSLPDSQIYYLVDASYQQAVNLLPEEKRKLLVQ 117


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.320    0.137    0.416 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 9,315,247
Number of extensions: 339865
Number of successful extensions: 458
Number of sequences better than 1.0e-05: 13
Number of HSP's gapped: 451
Number of HSP's successfully gapped: 13
Length of query: 122
Length of database: 38,378,431
Length adjustment: 88
Effective length of query: 34
Effective length of database: 28,229,039
Effective search space: 959787326
Effective search space used: 959787326
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 109 (46.6 bits)