BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0291.0035.p (291 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value all2672 [V] COG1131 ABC-type multidrug transport system, ATPase ... 239 4e-63 sll0489 [V] COG1131 ABC-type multidrug transport system, ATPase ... 181 1e-45 PA4037 [V] COG1131 ABC-type multidrug transport system, ATPase c... 177 2e-44 BB0754 [V] COG1131 ABC-type multidrug transport system, ATPase c... 170 2e-42 slr1113 [V] COG1131 ABC-type multidrug transport system, ATPase ... 169 3e-42 >all2672 [V] COG1131 ABC-type multidrug transport system, ATPase component Length = 293 Score = 239 bits (610), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 129/281 (45%), Positives = 175/281 (62%), Gaps = 5/281 (1%) Query: 3 LIIDHLTKTY-GGKQALNNVSFRVGEGIHGLLGPNGAGKTTLMRLLATLLEPTSGQVEIG 61 LII L K Y G QAL ++S ++ GI GLLGPNGAGK++LMR LATL + SG +E+ Sbjct: 2 LIIKQLNKKYPNGIQALRDISLKIDYGIFGLLGPNGAGKSSLMRTLATLQDADSGSIELD 61 Query: 62 GIS-LTDKSQIRRIVGYLPQEFAFYPGMSVLEAMDYLALLSGVKGRAERKRRIDHLLELV 120 G++ L + R I+GYLPQ+F YP +S + +D LA+ G +R+ + L+LV Sbjct: 62 GVNFLKNPQSARSILGYLPQDFGVYPSVSAEDLLDQLAVFKGFIHHQQRREIVAQQLQLV 121 Query: 121 NLTEQRRTRVKALSGGMKRRLGVAQAMIHEPKLLIVDEPTAGLDPEERIRFRRLLSKFAE 180 NL EQR+ ++ SGGM++R G+AQA++ PKL+IVDEPTAGLDP ERIRF LLS+ ++ Sbjct: 122 NLYEQRQQKLGTFSGGMRQRFGIAQALLGSPKLVIVDEPTAGLDPAERIRFHNLLSEISQ 181 Query: 181 GRIVLLSTHVVEDVESTCEQMTVLHKGSLRYHGRIGDLTAAAAGRVWTAELDRAEWSRDS 240 R++LLSTH+VEDV C M ++++G + G L A GRVWTA +E S Sbjct: 182 DRVLLLSTHIVEDVAELCPNMAIMNRGEILRSGSPQALINALNGRVWTAL--HSETSNVE 239 Query: 241 ERFPVLSAVPEGAGMRVRVLSDEQPYPGAQQAVPSIEDAYL 281 E + S + G VRVLSD QP Q P + D Y Sbjct: 240 ELTVITSRMSRGERW-VRVLSDSQPGKDFQPVEPDLNDVYF 279 >sll0489 [V] COG1131 ABC-type multidrug transport system, ATPase component Length = 342 Score = 181 bits (459), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 88/224 (39%), Positives = 146/224 (65%), Gaps = 3/224 (1%) Query: 5 IDHLTKTYGGKQALNNVSFRVGEG-IHGLLGPNGAGKTTLMRLLATLLEPTSGQVEIGGI 63 ++HL+K YG A+ NV F V +G I G LGPNGAGKTT MR+LA + T+G V + G Sbjct: 4 VEHLSKVYGSTTAIQNVDFSVQKGEILGFLGPNGAGKTTTMRILAGYIPATTGTVRVAGF 63 Query: 64 SLTDKS-QIRRIVGYLPQEFAFYPGMSVLEAMDYLALLSGVKGRAERKRRIDHLLELVNL 122 + ++S +R+ +GYLP+ Y M+V ++++A + GVK +R++R+ +E L Sbjct: 64 DVHEQSLAVRKRIGYLPENPPLYGDMTVASFLNFVASIKGVKP-GDRRQRVIWAMERCQL 122 Query: 123 TEQRRTRVKALSGGMKRRLGVAQAMIHEPKLLIVDEPTAGLDPEERIRFRRLLSKFAEGR 182 TE+R+ ++ LS G K+R+G+AQA++H+P ++I+DEPT GLDP++ I R L+ AE Sbjct: 123 TEKRKVLIRKLSKGFKQRVGIAQAIVHDPAVIILDEPTVGLDPKQIIEVRNLIKSLAEDH 182 Query: 183 IVLLSTHVVEDVESTCEQMTVLHKGSLRYHGRIGDLTAAAAGRV 226 ++LSTH++ +V TC+++T++++G + +L A G + Sbjct: 183 TIILSTHILPEVSMTCDRVTIINQGRVVATNTPDNLLAELKGNL 226 >PA4037 [V] COG1131 ABC-type multidrug transport system, ATPase component Length = 308 Score = 177 bits (448), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 87/216 (40%), Positives = 147/216 (68%), Gaps = 3/216 (1%) Query: 5 IDHLTKTYGGKQALNNVSFRVGEG-IHGLLGPNGAGKTTLMRLLATLLEPTSGQVEIGGI 63 ID L+K + G+ +N++SFR+ G I GLLGPNGAGK+T +++L+ L P++G V I G Sbjct: 4 IDRLSKRFSGRTVVNDLSFRIDRGEIVGLLGPNGAGKSTTLKMLSGFLAPSAGSVRIFGF 63 Query: 64 SLTDKS-QIRRIVGYLPQEFAFYPGMSVLEAMDYLALLSGVKGRAERKRRIDHLLELVNL 122 + DK+ Q ++++GYLP+ Y M+V + ++A + GR E++RRID ++ + L Sbjct: 64 DMQDKARQAQKLIGYLPENAPSYGEMTVEGFLAFVASIRDYSGR-EKRRRIDSAMDCMEL 122 Query: 123 TEQRRTRVKALSGGMKRRLGVAQAMIHEPKLLIVDEPTAGLDPEERIRFRRLLSKFAEGR 182 ++RR+ ++ LS G KRR+ +AQA++H+P+LL++DEPT GLDP ++ + R+L+ +E + Sbjct: 123 RDERRSIIETLSKGFKRRVALAQAILHDPELLLLDEPTDGLDPNQKHQVRQLVKNLSESK 182 Query: 183 IVLLSTHVVEDVESTCEQMTVLHKGSLRYHGRIGDL 218 IV++STH++E+V C + V++ G L G+L Sbjct: 183 IVVISTHILEEVSFMCSRALVINGGRLLADNTPGEL 218 >BB0754 [V] COG1131 ABC-type multidrug transport system, ATPase component Length = 309 Score = 170 bits (431), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 83/205 (40%), Positives = 136/205 (66%), Gaps = 5/205 (2%) Query: 5 IDHLTKTYGGKQALNNVSFRVGEG-IHGLLGPNGAGKTTLMRLLATLLEPTSGQVEIGGI 63 ++ +TK YG AL NVSF+V EG + G+LGPNGAGK+TL+++L + P+ G V+I G Sbjct: 4 VEKVTKMYGPFTALFNVSFKVEEGEVLGILGPNGAGKSTLIKILTSFHYPSKGNVKIFGK 63 Query: 64 SLTDKS-QIRRIVGYLPQEFAFYPGMSVLEAMDYLALLSGVKGRAERKRRIDHLLELVNL 122 + + S +I + +GY+P++ A YP +SV E YL +S +KG + K+ ID ++ + L Sbjct: 64 DIVEHSKEILQQIGYVPEKLALYPELSVKE---YLKFISEIKGVKKLKKEIDRVISIFKL 120 Query: 123 TEQRRTRVKALSGGMKRRLGVAQAMIHEPKLLIVDEPTAGLDPEERIRFRRLLSKFAEGR 182 E + LS G ++R+G+A A+I+ PKL+I+DEPT GLDP + I F+ L + A+ Sbjct: 121 KEVEDKLISQLSKGFRQRVGIAGALINNPKLVILDEPTNGLDPNQIIEFKEFLRELAKES 180 Query: 183 IVLLSTHVVEDVESTCEQMTVLHKG 207 +L S+H++ +VES C+++ +++ G Sbjct: 181 TILFSSHILSEVESICKRIIIVNNG 205 >slr1113 [V] COG1131 ABC-type multidrug transport system, ATPase component Length = 332 Score = 169 bits (429), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 91/216 (42%), Positives = 138/216 (63%), Gaps = 6/216 (2%) Query: 8 LTKTYGGKQALNNVSFRVGEG-IHGLLGPNGAGKTTLMRLLATLLEPTSGQVEIGGISLT 66 LTK + + A+ NV + EG ++GL+GPNGAGKTTL+R+LAT EPT G++ + G L Sbjct: 19 LTKRFDRQGAVTNVDLSIAEGAVYGLMGPNGAGKTTLIRMLATAEEPTKGEIYLFGDRLV 78 Query: 67 ---DKSQIRRIVGYLPQEFAFYPGMSVLEAMDYLALLSGVKGRAERKRRIDHLLELVNLT 123 D +I++ +GYLP ++ Y ++V + +DY A L +K R+ RI +LELV LT Sbjct: 79 AGADNLRIKQYLGYLPDDYPLYEDLNVWDYLDYFARLYHLKNPG-RRHRIQEVLELVQLT 137 Query: 124 EQRRTRVKALSGGMKRRLGVAQAMIHEPKLLIVDEPTAGLDPEERIRFRRLLSKF-AEGR 182 +R +R+ +LS GMK+RL +A+ +IHEP LL++DEP +GLDP R +FR ++ A G Sbjct: 138 SKRHSRINSLSRGMKQRLSLARTIIHEPILLLLDEPVSGLDPLARQQFRDIIRVLQAAGM 197 Query: 183 IVLLSTHVVEDVESTCEQMTVLHKGSLRYHGRIGDL 218 +L+S+HV+ D+ C + V+ G L + DL Sbjct: 198 TILISSHVLSDLAELCTAIGVMELGCLVESTTLADL 233 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.320 0.137 0.391 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 22,009,427 Number of extensions: 928508 Number of successful extensions: 19383 Number of sequences better than 1.0e-05: 2143 Number of HSP's gapped: 16506 Number of HSP's successfully gapped: 2354 Length of query: 291 Length of database: 38,378,431 Length adjustment: 105 Effective length of query: 186 Effective length of database: 26,268,361 Effective search space: 4885915146 Effective search space used: 4885915146 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 115 (48.9 bits)