BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0291.0032.p (1160 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value PA0928_1 [T] COG0642 Signal transduction histidine kinase 211 5e-54 MA2013_2 [T] COG0642 Signal transduction histidine kinase 208 3e-53 ZbarA_1 [T] COG0642 Signal transduction histidine kinase 191 6e-48 barA_1 [T] COG0642 Signal transduction histidine kinase 191 6e-48 ZbarA_1 [T] COG0642 Signal transduction histidine kinase 191 6e-48 >PA0928_1 [T] COG0642 Signal transduction histidine kinase Length = 509 Score = 211 bits (538), Expect = 5e-54, Method: Compositional matrix adjust. Identities = 115/239 (48%), Positives = 159/239 (66%), Gaps = 3/239 (1%) Query: 764 AKESAEQADRAKSEFLAIMSHELRTPMNGIMGMADLLAGTELDEEQQYYTEIINKSSESL 823 A++ A +A R KSEFLA MSHE+RTP+NGI+G +LL +EL QQ Y I KS+ESL Sbjct: 273 ARKEALEASRIKSEFLANMSHEIRTPLNGILGFTNLLQKSELSPRQQDYLTTIQKSAESL 332 Query: 824 LHILNEVLDFSKIEAGMMTLELQTVDLSQVIRNVMELFYPKALEKGXXXXXXXXXXXXXX 883 L I+NE+LDFSKIEAG + LE +L +I++ + + P A EK Sbjct: 333 LGIINEILDFSKIEAGKLVLENLPFNLRDLIQDALTMLAPAAHEKQLELVSLVYRDTPIQ 392 Query: 884 VVTDEIRLRQILVNLIGNAVKFTEEGEIHVTAGLQSIDETGDLV-IRFTVKDTGIGIPQG 942 + D RL+QIL NL+GNA+KFT+ G + V A L+ DE+ D +R +V+DTGIG+ + Sbjct: 393 LQGDPQRLKQILTNLVGNAIKFTQGGTVAVRAMLE--DESDDRAQLRISVQDTGIGLSEE 450 Query: 943 SQGLLFQSFSQLHPSINRKYGGTGLGLAISKKLVELLGGMIGVESNEGEGAEFFFTIHV 1001 Q LF++FSQ S++R+ GGTGLGL ISK+L+E +GG IGV+S GEGAEF+ ++ + Sbjct: 451 DQQALFKAFSQADNSLSRQAGGTGLGLVISKRLIEQMGGEIGVDSTPGEGAEFWISLSL 509 >MA2013_2 [T] COG0642 Signal transduction histidine kinase Length = 296 Score = 208 bits (530), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 111/254 (43%), Positives = 164/254 (64%), Gaps = 10/254 (3%) Query: 758 EKAIVRAKESAEQADRAKSEFLAIMSHELRTPMNGIMGMADLLAGTELDEEQQYYTEIIN 817 E+ +++AKE+AE A++AK +FLA MSHE+RTPMN ++GM ++L T L +EQ+ Y ++ + Sbjct: 4 EEQLLKAKEAAESANKAKGDFLANMSHEIRTPMNAVLGMLEMLLETSLTDEQREYLQLAH 63 Query: 818 KSSESLLHILNEVLDFSKIEAGMMTLELQTVDLSQVIRNVMELFYPKALEKGXXXXXXXX 877 S+ESLL I+++VLDFSKIE + LE + +L +I +++ L KA KG Sbjct: 64 ASAESLLSIIDDVLDFSKIEQNKLELEQISFELESLISHIINLLSGKAGSKGLKLAFHIE 123 Query: 878 XXXXXXVVTDEIRLRQILVNLIGNAVKFTEEGEIHVT----------AGLQSIDETGDLV 927 + D +RL+Q+L N++GNA+KFT++GEI ++ +GL + D ++ Sbjct: 124 KDLPSTFIGDPVRLKQVLFNILGNAIKFTKKGEIALSVEVYMPSERNSGLSNSDFPEEVA 183 Query: 928 IRFTVKDTGIGIPQGSQGLLFQSFSQLHPSINRKYGGTGLGLAISKKLVELLGGMIGVES 987 + F VKDTGIGIP +F F Q S+ R+YGGTGLGLAIS +LVEL+ G I VES Sbjct: 184 LLFKVKDTGIGIPPEKLSQIFDPFIQADASVTREYGGTGLGLAISSQLVELMEGRIWVES 243 Query: 988 NEGEGAEFFFTIHV 1001 G+G F+FT+ V Sbjct: 244 EVGKGCTFYFTVRV 257 >ZbarA_1 [T] COG0642 Signal transduction histidine kinase Length = 525 Score = 191 bits (485), Expect = 6e-48, Method: Compositional matrix adjust. Identities = 104/240 (43%), Positives = 148/240 (61%), Gaps = 1/240 (0%) Query: 764 AKESAEQADRAKSEFLAIMSHELRTPMNGIMGMADLLAGTELDEEQQYYTEIINKSSESL 823 AK+ A++A R KSEFLA MSHELRTP+NG++G L TEL Q+ + I +S+ +L Sbjct: 282 AKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQRDHLNTIERSANNL 341 Query: 824 LHILNEVLDFSKIEAGMMTLELQTVDLSQVIRNVMELFYPKALEKGXXXXXXXXXXXXXX 883 L I+N+VLDFSK+EAG + LE L + V+ L + +KG Sbjct: 342 LAIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDN 401 Query: 884 VVTDEIRLRQILVNLIGNAVKFTEEGEIHVTAGLQSIDETGDLVIRFTVKDTGIGIPQGS 943 V+ D +RL+QI+ NL+GNA+KFTE G I + +++ T + I ++DTGIGIP+ Sbjct: 402 VIGDPLRLQQIITNLVGNAIKFTENGNIDILVEKRALSNT-KVQIEVQIRDTGIGIPERD 460 Query: 944 QGLLFQSFSQLHPSINRKYGGTGLGLAISKKLVELLGGMIGVESNEGEGAEFFFTIHVFL 1003 Q LFQ+F Q SI+R++GGTGLGL I++KLV +GG I S G+ F+F I++ L Sbjct: 461 QSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHINLDL 520 >barA_1 [T] COG0642 Signal transduction histidine kinase Length = 525 Score = 191 bits (485), Expect = 6e-48, Method: Compositional matrix adjust. Identities = 104/240 (43%), Positives = 148/240 (61%), Gaps = 1/240 (0%) Query: 764 AKESAEQADRAKSEFLAIMSHELRTPMNGIMGMADLLAGTELDEEQQYYTEIINKSSESL 823 AK+ A++A R KSEFLA MSHELRTP+NG++G L TEL Q+ + I +S+ +L Sbjct: 282 AKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQRDHLNTIERSANNL 341 Query: 824 LHILNEVLDFSKIEAGMMTLELQTVDLSQVIRNVMELFYPKALEKGXXXXXXXXXXXXXX 883 L I+N+VLDFSK+EAG + LE L + V+ L + +KG Sbjct: 342 LAIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDN 401 Query: 884 VVTDEIRLRQILVNLIGNAVKFTEEGEIHVTAGLQSIDETGDLVIRFTVKDTGIGIPQGS 943 V+ D +RL+QI+ NL+GNA+KFTE G I + +++ T + I ++DTGIGIP+ Sbjct: 402 VIGDPLRLQQIITNLVGNAIKFTENGNIDILVEKRALSNT-KVQIEVQIRDTGIGIPERD 460 Query: 944 QGLLFQSFSQLHPSINRKYGGTGLGLAISKKLVELLGGMIGVESNEGEGAEFFFTIHVFL 1003 Q LFQ+F Q SI+R++GGTGLGL I++KLV +GG I S G+ F+F I++ L Sbjct: 461 QSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHINLDL 520 Score = 191 bits (485), Expect = 6e-48, Method: Compositional matrix adjust. Identities = 104/240 (43%), Positives = 148/240 (61%), Gaps = 1/240 (0%) Query: 764 AKESAEQADRAKSEFLAIMSHELRTPMNGIMGMADLLAGTELDEEQQYYTEIINKSSESL 823 AK+ A++A R KSEFLA MSHELRTP+NG++G L TEL Q+ + I +S+ +L Sbjct: 282 AKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQRDHLNTIERSANNL 341 Query: 824 LHILNEVLDFSKIEAGMMTLELQTVDLSQVIRNVMELFYPKALEKGXXXXXXXXXXXXXX 883 L I+N+VLDFSK+EAG + LE L + V+ L + +KG Sbjct: 342 LAIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDN 401 Query: 884 VVTDEIRLRQILVNLIGNAVKFTEEGEIHVTAGLQSIDETGDLVIRFTVKDTGIGIPQGS 943 V+ D +RL+QI+ NL+GNA+KFTE G I + +++ T + I ++DTGIGIP+ Sbjct: 402 VIGDPLRLQQIITNLVGNAIKFTENGNIDILVEKRALSNT-KVQIEVQIRDTGIGIPERD 460 Query: 944 QGLLFQSFSQLHPSINRKYGGTGLGLAISKKLVELLGGMIGVESNEGEGAEFFFTIHVFL 1003 Q LFQ+F Q SI+R++GGTGLGL I++KLV +GG I S G+ F+F I++ L Sbjct: 461 QSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHINLDL 520 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.317 0.134 0.380 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 84,617,320 Number of extensions: 3667184 Number of successful extensions: 12873 Number of sequences better than 1.0e-05: 498 Number of HSP's gapped: 12383 Number of HSP's successfully gapped: 542 Length of query: 1160 Length of database: 38,378,431 Length adjustment: 117 Effective length of query: 1043 Effective length of database: 24,884,353 Effective search space: 25954380179 Effective search space used: 25954380179 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 121 (51.2 bits)