BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0291.0030.p
         (133 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

lin2788 [S] COG5341 Uncharacterized protein conserved in bacteria      54   7e-08

>lin2788 [S] COG5341 Uncharacterized protein conserved in bacteria
          Length = 144

 Score = 53.5 bits (127), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 30/85 (35%), Positives = 52/85 (61%), Gaps = 3/85 (3%)

Query: 33  AQGELQAVITVDGKEYKTVSLT--KEEQTIDIQTKFGH-NILKVYDYGIRMTYSDAPLPI 89
            + EL AVI+VD KEYKTV+LT  K  ++ D++   GH N ++V    IR++ ++    +
Sbjct: 43  GKKELVAVISVDSKEYKTVTLTGHKGTESFDVKQPDGHTNTIEVSGEEIRISKANCNDQV 102

Query: 90  ALDMGFISRPKQQILCVPARLMVEV 114
            +  G I +    ++C+P +L++EV
Sbjct: 103 CVRTGAIDKQGDTVVCLPHKLVIEV 127


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.321    0.139    0.396 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 9,624,018
Number of extensions: 338735
Number of successful extensions: 647
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 647
Number of HSP's successfully gapped: 1
Length of query: 133
Length of database: 38,378,431
Length adjustment: 95
Effective length of query: 38
Effective length of database: 27,421,701
Effective search space: 1042024638
Effective search space used: 1042024638
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 109 (46.6 bits)