BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0291.0025.p
         (172 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BH1519 [R] COG0523 Putative GTPases (G3E family)                       73   2e-13
SA2368 [R] COG0523 Putative GTPases (G3E family)                       72   3e-13
BH0366 [R] COG0523 Putative GTPases (G3E family)                       66   2e-11
RSc0047 [R] COG0523 Putative GTPases (G3E family)                      61   7e-10
AGc5088 [R] COG0523 Putative GTPases (G3E family)                      55   6e-08

>BH1519 [R] COG0523 Putative GTPases (G3E family)
          Length = 320

 Score = 73.2 bits (178), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 45/113 (39%), Positives = 63/113 (55%), Gaps = 6/113 (5%)

Query: 42  KARGLTPGIVMNELGKKDVDGYILEEHAGANVEKLLDGCVCCSRKDELPRTLELLLA--- 98
           K  GL P IV+NE G+ +V+    E  A   V +LL+GC+CC+ +D+L   L+  L    
Sbjct: 27  KEDGLRPAIVLNEAGEMNVEK---ELFANETVVELLNGCICCTIQDDLKAELQRFLTIND 83

Query: 99  RRPDVIYIELTGVADPEEIAKSLLVPALSGRLVLHYSITVLDAENALEYGRRF 151
           R  DV+ IE TG+A+P EI + L  P    +L L   I ++DA   LEY   F
Sbjct: 84  RSVDVLLIEGTGIANPREIIEVLTDPPFIEQLALQSVIGIIDASRYLEYRSLF 136


>SA2368 [R] COG0523 Putative GTPases (G3E family)
          Length = 296

 Score = 72.4 bits (176), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 36/103 (34%), Positives = 61/103 (59%), Gaps = 3/103 (2%)

Query: 40  ESKARGLTPGIVMNELGKKDVDGYILEEHAGANVEKLLDGCVCCSRKDELPRTL-ELLLA 98
           ES    L P ++MNE GK  VDG ++ E     + +L +GC+CC+ K ++   L +L L 
Sbjct: 24  ESLKESLKPAVIMNEFGKMSVDGALVSE--DIPLSELTEGCICCAMKADVSEQLHQLYLK 81

Query: 99  RRPDVIYIELTGVADPEEIAKSLLVPALSGRLVLHYSITVLDA 141
            +PD+++IE +G+A+P  +  + L P L+    + + I V+DA
Sbjct: 82  EQPDIVFIECSGIAEPVSVLDACLTPILAPFTTITHMIGVIDA 124


>BH0366 [R] COG0523 Putative GTPases (G3E family)
          Length = 311

 Score = 66.2 bits (160), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 36/108 (33%), Positives = 65/108 (60%), Gaps = 3/108 (2%)

Query: 40  ESKARGLTPGIVMNELGKKDVDGYILEEHAGANVEKLLDGCVCCSRKDELPRTLELLLAR 99
           + +ARG   G++MNELG+  VD  I+ +     ++++L+GC+CC+ + EL   L+  +  
Sbjct: 29  QEQARGNKIGVLMNELGEVSVDSSIVPK--DTPLKEMLNGCICCTIQGELSAQLQSFIEE 86

Query: 100 RP-DVIYIELTGVADPEEIAKSLLVPALSGRLVLHYSITVLDAENALE 146
              DVI+IE TG A P E+ ++   P  +G++ +   +TV++A   +E
Sbjct: 87  YELDVIFIEATGAAHPLEVVEACTHPVFAGQVRVRGVLTVVNARQWIE 134


>RSc0047 [R] COG0523 Putative GTPases (G3E family)
          Length = 362

 Score = 61.2 bits (147), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 32/111 (28%), Positives = 63/111 (56%), Gaps = 7/111 (6%)

Query: 41  SKARGLTPGIVMNELGKKDVDGYILEEHAGANVEKLLDGCVCCSRKDELPRTLELLLARR 100
           ++  G+   ++ NE G++++D  IL +     + ++ +GC+CC+ + +L   L  LL RR
Sbjct: 27  TEQHGMKIAVIENEFGEENIDNDILVQDGNEQIVQMSNGCICCTIRGDLVAALSDLLTRR 86

Query: 101 P------DVIYIELTGVADPEEIAKSLLV-PALSGRLVLHYSITVLDAENA 144
                  D + IE TGVA+P  +A++  +   ++ R +L   IT++DA++ 
Sbjct: 87  DKGELQFDRVVIETTGVANPGPVAQTFFMDDEIAARYLLDAVITLVDAKHG 137


>AGc5088 [R] COG0523 Putative GTPases (G3E family)
          Length = 133

 Score = 54.7 bits (130), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 6/98 (6%), Positives = 20/98 (20%), Gaps = 7/98 (7%)

Query: 41  SKARGLTPGIVMNELGKKDVDGYIL-----EEHAGANVEKLLDGCVCCSRKDELPRTLEL 95
            +   + P   M++  +  +D               ++       +  S  +     +  
Sbjct: 30  IETVCIGPEDDMDQRRQDIIDAVARANDGNGVIILTDMFGGTPSNLAISVMNNGNVEVIA 89

Query: 96  LLARRPDV--IYIELTGVADPEEIAKSLLVPALSGRLV 131
            +     +    +      D      S           
Sbjct: 90  GVNLPMLIKLAGVRSEDNMDKALQDASDAGRKYINVAS 127


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.321    0.141    0.414 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 10,513,491
Number of extensions: 371168
Number of successful extensions: 1047
Number of sequences better than 1.0e-05: 49
Number of HSP's gapped: 1008
Number of HSP's successfully gapped: 49
Length of query: 172
Length of database: 38,378,431
Length adjustment: 99
Effective length of query: 73
Effective length of database: 26,960,365
Effective search space: 1968106645
Effective search space used: 1968106645
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 112 (47.8 bits)