BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0291.0024.p
         (45 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SAS042 [J] COG0267 Ribosomal protein L33                               74   7e-14
lin1372 [J] COG0267 Ribosomal protein L33                              72   3e-13
SAS047 [J] COG0267 Ribosomal protein L33                               66   1e-11
BS_yqgNa [J] COG0267 Ribosomal protein L33                             59   1e-09
MT0663 [J] COG0267 Ribosomal protein L33                               51   5e-07

>SAS042 [J] COG0267 Ribosomal protein L33
          Length = 49

 Score = 73.6 bits (179), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 34/45 (75%), Positives = 38/45 (84%)

Query: 1  VTLACTETGDRNYTTTKNKKNQPGRLEMKKYSPRLKRVTLHRETR 45
          VTLACTE GDRNY TTKNK+N P R+EMKKY PRL + TLHRET+
Sbjct: 5  VTLACTECGDRNYITTKNKRNNPERIEMKKYCPRLNKYTLHRETK 49


>lin1372 [J] COG0267 Ribosomal protein L33
          Length = 49

 Score = 71.6 bits (174), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 32/45 (71%), Positives = 38/45 (84%)

Query: 1  VTLACTETGDRNYTTTKNKKNQPGRLEMKKYSPRLKRVTLHRETR 45
          +TL CTE GDRNY TTKNK+  P R+E+KKY PRL+RVTLHRET+
Sbjct: 5  ITLECTECGDRNYITTKNKRENPERIELKKYCPRLRRVTLHRETK 49


>SAS047 [J] COG0267 Ribosomal protein L33
          Length = 49

 Score = 66.2 bits (160), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 31/45 (68%), Positives = 36/45 (80%)

Query: 1  VTLACTETGDRNYTTTKNKKNQPGRLEMKKYSPRLKRVTLHRETR 45
          VTLACTE GDRNY TTKNK+N P R+EMKK+  R  + TLHRET+
Sbjct: 5  VTLACTECGDRNYITTKNKRNNPERVEMKKFCSRENKQTLHRETK 49


>BS_yqgNa [J] COG0267 Ribosomal protein L33
          Length = 187

 Score = 59.3 bits (142), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 3/45 (6%), Positives = 8/45 (17%)

Query: 1  VTLACTETGDRNYTTTKNKKNQPGRLEMKKYSPRLKRVTLHRETR 45
          +     E           +K +     +          T+     
Sbjct: 5  LRKKTLEALSALSNEDILQKTERMYKYLFSLPEWQNAGTIAVTIS 49


>MT0663 [J] COG0267 Ribosomal protein L33
          Length = 55

 Score = 50.8 bits (120), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 23/45 (51%), Positives = 29/45 (64%)

Query: 1  VTLACTETGDRNYTTTKNKKNQPGRLEMKKYSPRLKRVTLHRETR 45
          +TLAC     RNY T KN++N P RLE+KK+ P   +   HRETR
Sbjct: 11 ITLACEVCKHRNYITKKNRRNDPDRLELKKFCPNCGKHQAHRETR 55


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.313    0.126    0.361 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 2,944,859
Number of extensions: 64350
Number of successful extensions: 69
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 71
Number of HSP's successfully gapped: 10
Length of query: 45
Length of database: 38,378,431
Length adjustment: 19
Effective length of query: 26
Effective length of database: 36,187,085
Effective search space: 940864210
Effective search space used: 940864210
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 109 (46.6 bits)