BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0291.0022.p (230 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BS_ycdI [P] COG1121 ABC-type Mn/Zn transport systems, ATPase com... 274 8e-74 lin0192 [P] COG1121 ABC-type Mn/Zn transport systems, ATPase com... 234 1e-61 SPy0093 [P] COG1121 ABC-type Mn/Zn transport systems, ATPase com... 221 8e-58 SP2171 [P] COG1121 ABC-type Mn/Zn transport systems, ATPase comp... 221 1e-57 L166512 [P] COG1121 ABC-type Mn/Zn transport systems, ATPase com... 219 3e-57 >BS_ycdI [P] COG1121 ABC-type Mn/Zn transport systems, ATPase component Length = 196 Score = 274 bits (701), Expect = 8e-74, Method: Compositional matrix adjust. Identities = 0/226 (0%), Positives = 0/226 (0%) Query: 1 MKDVVFGYGSEPVIDNLSLEIEAGQFIGITGPNXXXXXXXXXXXXXXXRPWSGTVTLNKE 60 + ++ N E ++ T + Sbjct: 6 SPGALSTLFTDARTHNGWRETPVSDETLREIYALMKWGPTSANCSPARIVFTRTAEGKER 65 Query: 61 ITEGEKLAIGYVPQQVASFNAGFPSKVIELVRSGCYPRLGWFGRFTKEQEELVERSLRQV 120 + +P FT + E + R Sbjct: 66 LRPALSSGNLQKTLTAPVTAIVAWDSEFYERLPLLFPHGDARSWFTSSPQLAEETAFRNS 125 Query: 121 DMWEYRNRRIGELSGGQKQRICIARALAQQPQVLVLDEPATGMDIGSRSGFYKLMRHYVS 180 M G + + + I G + + Sbjct: 126 SMQAAYLIVACRALGLDTGPMSGFDRQHVDDAFFTGSTLKSNLLINIGYGDSSKLYARLP 185 Query: 181 NHGRTVIMVTHGLEETRPYLDTVISLEREEQEGWKCLVTNSCSAHF 226 Sbjct: 186 231 >lin0192 [P] COG1121 ABC-type Mn/Zn transport systems, ATPase component Length = 234 Score = 234 bits (596), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 107/222 (48%), Positives = 148/222 (66%) Query: 1 MKDVVFGYGSEPVIDNLSLEIEAGQFIGITGPNXXXXXXXXXXXXXXXRPWSGTVTLNKE 60 + ++ F Y SEPV++N+S ++ AG+FI +TG N +P G+VT +K+ Sbjct: 6 IANIGFKYESEPVLENISFQVSAGEFIILTGENGAAKSTLLRIILGILQPDKGSVTFSKK 65 Query: 61 ITEGEKLAIGYVPQQVASFNAGFPSKVIELVRSGCYPRLGWFGRFTKEQEELVERSLRQV 120 T+G +L +GYVPQQ+ASFNAGFPS V+ELVRSG +P WF R T++ VE++L+ V Sbjct: 66 NTDGGRLLVGYVPQQIASFNAGFPSTVLELVRSGRFPNGKWFKRLTEKDHAHVEKALKSV 125 Query: 121 DMWEYRNRRIGELSGGQKQRICIARALAQQPQVLVLDEPATGMDIGSRSGFYKLMRHYVS 180 +MW+YR++RIGELSGGQKQRIC+AR A P +L+LDEP T MD S+ FY L++H Sbjct: 126 EMWDYRHKRIGELSGGQKQRICLARMFATDPDILILDEPQTAMDKQSKIRFYDLLKHEAQ 185 Query: 181 NHGRTVIMVTHGLEETRPYLDTVISLEREEQEGWKCLVTNSC 222 HG+ ++MVTH EE Y+D I L R+E WKC + C Sbjct: 186 VHGKAILMVTHDSEEMEDYVDKHIRLVRKEDVSWKCFSMDLC 227 >SPy0093 [P] COG1121 ABC-type Mn/Zn transport systems, ATPase component Length = 239 Score = 221 bits (562), Expect = 8e-58, Method: Compositional matrix adjust. Identities = 102/217 (47%), Positives = 139/217 (64%) Query: 1 MKDVVFGYGSEPVIDNLSLEIEAGQFIGITGPNXXXXXXXXXXXXXXXRPWSGTVTLNKE 60 +K++ F Y SEPV++ ++ +++G+F+ +TG N +P +G VT+ K+ Sbjct: 6 VKNLSFQYESEPVLEGITYHLDSGEFVTMTGENGAAKSTLIKATLGILQPKAGRVTIAKK 65 Query: 61 ITEGEKLAIGYVPQQVASFNAGFPSKVIELVRSGCYPRLGWFGRFTKEQEELVERSLRQV 120 +G++L I Y+PQQVASFNAGFPS V E V+SG YPR GWF K EE V+ SL V Sbjct: 66 NKDGKQLRIAYLPQQVASFNAGFPSTVYEFVKSGRYPRSGWFRHLNKHDEEHVQASLEAV 125 Query: 121 DMWEYRNRRIGELSGGQKQRICIARALAQQPQVLVLDEPATGMDIGSRSGFYKLMRHYVS 180 MWE R++RIG LSGGQKQR+ IAR A P + VLDEP TGMD G+ FY+LM H Sbjct: 126 GMWENRHKRIGSLSGGQKQRVVIARMFASDPDIFVLDEPTTGMDSGTTDTFYELMHHSAH 185 Query: 181 NHGRTVIMVTHGLEETRPYLDTVISLEREEQEGWKCL 217 HG++V+M+TH EE + Y D I L R ++ W+C Sbjct: 186 QHGKSVLMITHDPEEVKAYADRNIHLVRNQKLPWRCF 222 >SP2171 [P] COG1121 ABC-type Mn/Zn transport systems, ATPase component Length = 234 Score = 221 bits (562), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 100/217 (46%), Positives = 139/217 (64%) Query: 1 MKDVVFGYGSEPVIDNLSLEIEAGQFIGITGPNXXXXXXXXXXXXXXXRPWSGTVTLNKE 60 ++D+ F Y EPV+++++ +++G+F+ +TG N +P G V ++K Sbjct: 6 VEDLSFYYDKEPVLEHINYCVDSGEFVTLTGENGAAKTTLIKASLGILQPRIGKVAISKT 65 Query: 61 ITEGEKLAIGYVPQQVASFNAGFPSKVIELVRSGCYPRLGWFGRFTKEQEELVERSLRQV 120 T+G+KL I Y+PQQ+ASFNAGFPS V E V+SG YPR GWF R EE ++ SL V Sbjct: 66 NTQGKKLRIAYLPQQIASFNAGFPSTVYEFVKSGRYPRKGWFRRLNAHDEEHIKASLDSV 125 Query: 121 DMWEYRNRRIGELSGGQKQRICIARALAQQPQVLVLDEPATGMDIGSRSGFYKLMRHYVS 180 MWE+R++R+G LSGGQKQR IAR A P V +LDEP TGMD GS++ FY+LM H Sbjct: 126 GMWEHRDKRLGSLSGGQKQRAVIARMFASDPDVFILDEPTTGMDAGSKNEFYELMHHSAH 185 Query: 181 NHGRTVIMVTHGLEETRPYLDTVISLEREEQEGWKCL 217 +HG+ V+M+TH EE + Y D I L R + W+C Sbjct: 186 HHGKAVLMITHDPEEVKDYADRNIHLVRNQDSPWRCF 222 >L166512 [P] COG1121 ABC-type Mn/Zn transport systems, ATPase component Length = 245 Score = 219 bits (558), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 101/217 (46%), Positives = 137/217 (63%) Query: 1 MKDVVFGYGSEPVIDNLSLEIEAGQFIGITGPNXXXXXXXXXXXXXXXRPWSGTVTLNKE 60 +++++F Y EPV++N+S +++G+F+ +TG N +P G + ++ + Sbjct: 6 VENLIFYYDREPVLENISYHVDSGEFVTLTGENGAAKSTLIKTTLGILKPKKGKIKISPK 65 Query: 61 ITEGEKLAIGYVPQQVASFNAGFPSKVIELVRSGCYPRLGWFGRFTKEQEELVERSLRQV 120 GEKL I Y+PQQVASFNAGFPS V E V SG YPR GWF + T E V+ +L V Sbjct: 66 NNRGEKLRIAYLPQQVASFNAGFPSSVHEFVMSGRYPRQGWFKKMTAHDSEHVKAALDSV 125 Query: 121 DMWEYRNRRIGELSGGQKQRICIARALAQQPQVLVLDEPATGMDIGSRSGFYKLMRHYVS 180 MW+YRN+RIGELSGGQKQRI IAR A P + +LDEP TGMD S S FY+LM H Sbjct: 126 GMWDYRNKRIGELSGGQKQRIAIARMFASDPDLFILDEPTTGMDDVSSSDFYELMHHAAH 185 Query: 181 NHGRTVIMVTHGLEETRPYLDTVISLEREEQEGWKCL 217 HG++V+MVTH EE + Y D I L +++ + C Sbjct: 186 KHGKSVLMVTHDPEEVKDYADRNIHLLKDKNGKFACF 222 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.319 0.137 0.417 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 16,720,143 Number of extensions: 682346 Number of successful extensions: 6691 Number of sequences better than 1.0e-05: 1807 Number of HSP's gapped: 5746 Number of HSP's successfully gapped: 1906 Length of query: 230 Length of database: 38,378,431 Length adjustment: 103 Effective length of query: 127 Effective length of database: 26,499,029 Effective search space: 3365376683 Effective search space used: 3365376683 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 114 (48.5 bits)