BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0291.0019.p
         (62 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BS_yhzA [J] COG0199 Ribosomal protein S14                              64   6e-11
SA1171 [J] COG0199 Ribosomal protein S14                               60   6e-10
SPy1871 [J] COG0199 Ribosomal protein S14                              56   1e-08
lin1995 [J] COG0199 Ribosomal protein S14                              47   8e-06

>BS_yhzA [J] COG0199 Ribosomal protein S14
          Length = 89

 Score = 63.5 bits (153), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 32/43 (74%), Positives = 36/43 (83%)

Query: 1  MAKKSKIVKELKRQELVAEFADKRRELKAKGDYMALQKLPRDS 43
          MAKKSK+ KELKRQ+LV ++A  RRELK KGDY AL KLPRDS
Sbjct: 1  MAKKSKVAKELKRQQLVEQYAGIRRELKEKGDYEALSKLPRDS 43


>SA1171 [J] COG0199 Ribosomal protein S14
          Length = 89

 Score = 60.5 bits (145), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 31/43 (72%), Positives = 37/43 (86%)

Query: 1  MAKKSKIVKELKRQELVAEFADKRRELKAKGDYMALQKLPRDS 43
          MAKKSKI KE KR+ELV ++ + R+ELKAKGDY AL+KLPRDS
Sbjct: 1  MAKKSKIAKERKREELVNKYYELRKELKAKGDYEALRKLPRDS 43


>SPy1871 [J] COG0199 Ribosomal protein S14
          Length = 89

 Score = 56.2 bits (134), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 28/43 (65%), Positives = 36/43 (83%)

Query: 1  MAKKSKIVKELKRQELVAEFADKRRELKAKGDYMALQKLPRDS 43
          MAKKSKI K  K+ +L+ ++AD RR+LKAKGDY +L+KLPRDS
Sbjct: 1  MAKKSKIAKYQKQLQLIEQYADLRRDLKAKGDYESLRKLPRDS 43


>lin1995 [J] COG0199 Ribosomal protein S14
          Length = 89

 Score = 47.0 bits (110), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 24/43 (55%), Positives = 32/43 (74%)

Query: 1  MAKKSKIVKELKRQELVAEFADKRRELKAKGDYMALQKLPRDS 43
          MAKKSK+ K   +Q LV ++A+ RR LKA+G +  L+KLPRDS
Sbjct: 1  MAKKSKVAKHEHQQALVEQYAELRRTLKAEGRFDELRKLPRDS 43


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.314    0.128    0.345 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 3,819,690
Number of extensions: 116704
Number of successful extensions: 210
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 210
Number of HSP's successfully gapped: 5
Length of query: 62
Length of database: 38,378,431
Length adjustment: 34
Effective length of query: 28
Effective length of database: 34,457,075
Effective search space: 964798100
Effective search space used: 964798100
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 109 (46.6 bits)