BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0291.0016.p
         (213 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

NMA0535 [V] COG1132 ABC-type multidrug transport system, ATPase ...    62   9e-10
MA0535 [QR] COG0500 SAM-dependent methyltransferases                   62   9e-10
NMA0804 [U] COG1826 Sec-independent protein secretion pathway co...    50   4e-06

>NMA0535 [V] COG1132 ABC-type multidrug transport system, ATPase and
           permease components
          Length = 266

 Score = 61.6 bits (148), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 58/215 (26%), Positives = 97/215 (45%), Gaps = 23/215 (10%)

Query: 5   WSTRFAREGMIWGDQPSPSALRAKAWFLEQGVKSVLVPGAGYGRNTKVFSSDLETYGVEL 64
           W   ++   + WG    P+++R+   +L  G+K VL  G+G GR     S      GV++
Sbjct: 62  WDKEYSH--LKWG---GPASIRSLQAYLAPGMK-VLDAGSGNGRYLGELSRRYSAVGVDI 115

Query: 65  SGEALELAAGRDSQT------RFIE--GSALE--PQLDILVDAVYCYDVLHLFLAGERRQ 114
           S     L A R S+T      RF E  G+++   P      D + CY VL      ER  
Sbjct: 116 S-----LIALRSSRTQLARSGRFAEHFGASVHALPFKSGSFDGILCYGVLQHLFKEEREA 170

Query: 115 LIAACLAQLRPGGLLYFTSFSDEDSNNG--HGRMLEPGTYEYKEGKYAHFFSDADLREHF 172
            +   +  L  GGL++F +F  ED   G       E  T+  + G   H+F++ +++E F
Sbjct: 171 AVREFMHVLNCGGLIFFEAFGREDMRCGGEPSSPFENNTFVRQNGIIYHYFTEEEVKELF 230

Query: 173 SAAEVVETGTFQESLQSPGGGTHEYLLREIFARKR 207
              EV+E  + ++     G     +++R +F + R
Sbjct: 231 CGFEVLELESVRKEKTFGGESYVRHMVRGVFRKLR 265


>MA0535 [QR] COG0500 SAM-dependent methyltransferases
          Length = 266

 Score = 61.6 bits (148), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 58/215 (26%), Positives = 97/215 (45%), Gaps = 23/215 (10%)

Query: 5   WSTRFAREGMIWGDQPSPSALRAKAWFLEQGVKSVLVPGAGYGRNTKVFSSDLETYGVEL 64
           W   ++   + WG    P+++R+   +L  G+K VL  G+G GR     S      GV++
Sbjct: 62  WDKEYSH--LKWG---GPASIRSLQAYLAPGMK-VLDAGSGNGRYLGELSRRYSAVGVDI 115

Query: 65  SGEALELAAGRDSQT------RFIE--GSALE--PQLDILVDAVYCYDVLHLFLAGERRQ 114
           S     L A R S+T      RF E  G+++   P      D + CY VL      ER  
Sbjct: 116 S-----LIALRSSRTQLARSGRFAEHFGASVHALPFKSGSFDGILCYGVLQHLFKEEREA 170

Query: 115 LIAACLAQLRPGGLLYFTSFSDEDSNNG--HGRMLEPGTYEYKEGKYAHFFSDADLREHF 172
            +   +  L  GGL++F +F  ED   G       E  T+  + G   H+F++ +++E F
Sbjct: 171 AVREFMHVLNCGGLIFFEAFGREDMRCGGEPSSPFENNTFVRQNGIIYHYFTEEEVKELF 230

Query: 173 SAAEVVETGTFQESLQSPGGGTHEYLLREIFARKR 207
              EV+E  + ++     G     +++R +F + R
Sbjct: 231 CGFEVLELESVRKEKTFGGESYVRHMVRGVFRKLR 265


>NMA0804 [U] COG1826 Sec-independent protein secretion pathway components
          Length = 245

 Score = 49.7 bits (117), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 46/173 (26%), Positives = 75/173 (43%), Gaps = 14/173 (8%)

Query: 4   YWSTRFAREGMIWGDQPSPSALRAKAWFLEQGVKSVLVPGAGYGRNTKVFSS-------- 55
           +W   F+     +GD+PS  A +A A F ++G K +L  G G GR+T  F+S        
Sbjct: 40  HWEKVFSNTCSRFGDEPSYPARKAAAIFEKEGKKKILELGGGQGRDTCFFASRGFSVHSL 99

Query: 56  DLETYGVELSGEALELAAGRDSQTRFIEGSALEP---QLDILVDAVYCYDVLHLFLAGER 112
           D    G +   E  E  +G       +   A  P   + +   DA Y + +  + L  + 
Sbjct: 100 DYTESGTKAMKEKAE-ESGFGKYVTALRHDARNPLPFEAETF-DACYSHMLYCMALTTDE 157

Query: 113 RQLIAACLAQ-LRPGGLLYFTSFSDEDSNNGHGRMLEPGTYEYKEGKYAHFFS 164
            + +   + + L+PGG+  +T+    D++ G G       YE   G   HFFS
Sbjct: 158 LEFLCKEIKRVLKPGGINIYTARHTGDAHYGTGTHRGEDMYEIAGGFIVHFFS 210


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.319    0.136    0.405 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 16,758,457
Number of extensions: 666981
Number of successful extensions: 1178
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 1177
Number of HSP's successfully gapped: 3
Length of query: 213
Length of database: 38,378,431
Length adjustment: 102
Effective length of query: 111
Effective length of database: 26,614,363
Effective search space: 2954194293
Effective search space used: 2954194293
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 113 (48.1 bits)