BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0291.0009.p (220 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Ta1186 [K] COG2345 Predicted transcriptional regulator 105 4e-23 TVN1422 [K] COG2345 Predicted transcriptional regulator 103 2e-22 Cgl1528 [K] COG2345 Predicted transcriptional regulator 82 5e-16 Rv1460 [K] COG2345 Predicted transcriptional regulator 78 9e-15 MT1507 [K] COG2345 Predicted transcriptional regulator 78 9e-15 >Ta1186 [K] COG2345 Predicted transcriptional regulator Length = 216 Score = 105 bits (263), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 59/209 (28%), Positives = 108/209 (51%) Query: 5 QESGSTRRMIMTLLKMKGPLTIGALAEELGITEMGVRRHVLQLEQEALAKTKVVRQAMGR 64 Q+S T I+ LK +T+ +A+++G+++M + +H+ LE L + ++ + MGR Sbjct: 7 QDSYPTESRILMALKKSDGMTLQEIAQQMGLSKMAILKHMQVLENRHLVERRIAKGDMGR 66 Query: 65 PLHVYSLTERAEDHFPKSYHNLALELLRELDHGSGQEAVNVLFEGRRKRMLAQYAPMMEK 124 P + + L + + F S + +L+ LD ++ V E R K + Y ++ Sbjct: 67 PFYRFYLLRDSSEAFGSSGDKVLTDLIDFLDSTGNRDLVVKFLEKRYKDVAESYRLIIGG 126 Query: 125 RNLEERVAELSSIQNAGGYMAEWNQEEDGSYVMQEYNCPIRQVATQYRKACQCEQALFEE 184 +ERV +L+ ++ Y+ E + +G Y + EYNCPI V+ ++ +AC E LFE Sbjct: 127 VRDDERVEKLTQLRYEENYVPELKKVGNGKYELLEYNCPIFTVSRKFGEACALECHLFES 186 Query: 185 LLGAKVTRTECMAEGGQSCRYAITPRKKD 213 +LG KV + G +C++ I KK+ Sbjct: 187 VLGMKVVSSHTQVNGHGTCKFIIEREKKE 215 >TVN1422 [K] COG2345 Predicted transcriptional regulator Length = 205 Score = 103 bits (257), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 59/205 (28%), Positives = 100/205 (48%), Gaps = 1/205 (0%) Query: 9 STRRMIMTLLKMKGPLTIGALAEELGITEMGVRRHVLQLEQEALAKTKVVRQAMGRPLHV 68 ST I+ LLK GP + LA+ELGI+ M V RH+ +LE + + + + GRP Sbjct: 2 STENEIIILLKKDGPKRLDELAKELGISNMAVLRHMEKLEATGVVERRTFKGKQGRPYFK 61 Query: 69 YSLTERAEDHFPKSYHNLALELLRELDHGSGQEAVNVLFEGRRKRMLAQYAPMMEKRNLE 128 +S+ E S + L+L+ L ++ ++ E R + + +Y M + + Sbjct: 62 FSIKEIGASQITNSDGKILLDLISFLSENGHEKILDNFLEWRYSQQIIEYRKQMSGEDSD 121 Query: 129 ERVAELSSIQNAGGYMAEWNQEEDGSYVMQEYNCPIRQVATQYRKACQCEQALFEELLGA 188 ++ L ++ Y E++ DG Y + EYNCPI ++A + AC+ E+ LFE G Sbjct: 122 QKFLTLVKLRYDDCYFPEYSV-RDGIYEITEYNCPIFRIAQKDGYACELERKLFENTTGF 180 Query: 189 KVTRTECMAEGGQSCRYAITPRKKD 213 V T +G SC++ + + D Sbjct: 181 DVEYTHRQVDGAYSCKFILRKKPFD 205 >Cgl1528 [K] COG2345 Predicted transcriptional regulator Length = 228 Score = 82.4 bits (202), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 64/214 (29%), Positives = 100/214 (46%), Gaps = 10/214 (4%) Query: 7 SGSTRRMIMTLLKMKGPLTIGALAEELGITEMGVRRHVLQLEQEALAKTKVVRQA----- 61 G TRR I+ +L + P+ +AE+L ++ +GVRRH+ L +E LA+ RQ Sbjct: 14 DGDTRRKILLILLERAPVIASDIAEQLQLSTVGVRRHLDNLVEENLAEAANPRQNPYEPK 73 Query: 62 -MGRPLHVYSLTERAEDHFPKSYHNLALELLRELDHGSGQEAVNVLFEGRRKRMLAQYAP 120 GRP Y LT++ F Y +LA L L G +AV R + ++ P Sbjct: 74 MRGRPAKTYRLTDKGRSIFGHEYDSLAAAALATLREVGGDDAVRQFARKRIETIVEGITP 133 Query: 121 M-MEKRNLEERVAELSSIQNAGGYMAEWNQEEDGSYVMQEYNCPIRQVATQYRKACQCEQ 179 + +++E+ L + GY A + +G + Q ++CPI VAT++ + C+ E Sbjct: 134 ADVTDQSIEDTAKSLVEAFSRHGYAATVDATRNGLQLCQ-HHCPISTVATEFPELCEAEH 192 Query: 180 ALFEELLGAKVTRTECMAEGGQSCRYAI--TPRK 211 ELLG +A+G C I TP K Sbjct: 193 QAVSELLGQHTQPLATIADGHGICTTNIPLTPIK 226 >Rv1460 [K] COG2345 Predicted transcriptional regulator Length = 278 Score = 78.2 bits (191), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 60/206 (29%), Positives = 95/206 (46%), Gaps = 8/206 (3%) Query: 6 ESGSTRRMIMTLLKMKGPLTIGALAEELGITEMGVRRHVLQLEQEALAKTKVV----RQA 61 G TRR I+ LL G +T G + + LG++ GVRRH+ L + A+ + Sbjct: 49 SDGHTRRAIVRLLLESGSITAGEIGDRLGLSAAGVRRHLDALIEAGDAEASAAAPWQQVG 108 Query: 62 MGRPLHVYSLTERAEDHFPKSYHNLALELLRELDHGSGQEAVNVLFEGRRKRMLAQYAPM 121 GRP Y LT SY +LA +R+L G+EAV R +LA AP Sbjct: 109 RGRPAKRYRLTAAGRAKLDHSYDDLASAAMRQLREIGGEEAVRTFARRRIDAILADVAPA 168 Query: 122 --MEKRNLEERVAELSSIQNAGGYMAEWNQEEDGSYVMQ--EYNCPIRQVATQYRKACQC 177 + LE +++ + GY+A + + +Q +++CP+ VA ++ + C+ Sbjct: 169 DGPDDAALEAAAERIATALSKAGYVATTTRVGGPIHGVQICQHHCPVSHVAEEFPELCET 228 Query: 178 EQALFEELLGAKVTRTECMAEGGQSC 203 EQ E+LG V R + G +C Sbjct: 229 EQQAMAEVLGTHVQRLATIVNGDCAC 254 >MT1507 [K] COG2345 Predicted transcriptional regulator Length = 278 Score = 78.2 bits (191), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 60/206 (29%), Positives = 95/206 (46%), Gaps = 8/206 (3%) Query: 6 ESGSTRRMIMTLLKMKGPLTIGALAEELGITEMGVRRHVLQLEQEALAKTKVV----RQA 61 G TRR I+ LL G +T G + + LG++ GVRRH+ L + A+ + Sbjct: 49 SDGHTRRAIVRLLLESGSITAGEIGDRLGLSAAGVRRHLDALIEAGDAEASAAAPWQQVG 108 Query: 62 MGRPLHVYSLTERAEDHFPKSYHNLALELLRELDHGSGQEAVNVLFEGRRKRMLAQYAPM 121 GRP Y LT SY +LA +R+L G+EAV R +LA AP Sbjct: 109 RGRPAKRYRLTAAGRAKLDHSYDDLASAAMRQLREIGGEEAVRTFARRRIDAILADVAPA 168 Query: 122 --MEKRNLEERVAELSSIQNAGGYMAEWNQEEDGSYVMQ--EYNCPIRQVATQYRKACQC 177 + LE +++ + GY+A + + +Q +++CP+ VA ++ + C+ Sbjct: 169 DGPDDAALEAAAERIATALSKAGYVATTTRVGGPIHGVQICQHHCPVSHVAEEFPELCET 228 Query: 178 EQALFEELLGAKVTRTECMAEGGQSC 203 EQ E+LG V R + G +C Sbjct: 229 EQQAMAEVLGTHVQRLATIVNGDCAC 254 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.316 0.130 0.369 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 14,895,398 Number of extensions: 556362 Number of successful extensions: 2028 Number of sequences better than 1.0e-05: 7 Number of HSP's gapped: 2023 Number of HSP's successfully gapped: 7 Length of query: 220 Length of database: 38,378,431 Length adjustment: 102 Effective length of query: 118 Effective length of database: 26,614,363 Effective search space: 3140494834 Effective search space used: 3140494834 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 114 (48.5 bits)