BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0291.0008.p
         (158 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BH3244 [R] COG4980 Gas vesicle protein                                 55   3e-08
lin1642 [R] COG4980 Gas vesicle protein                                50   1e-06

>BH3244 [R] COG4980 Gas vesicle protein
          Length = 140

 Score = 55.5 bits (132), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 30/66 (45%), Positives = 40/66 (60%)

Query: 4  DTKSLLWGILAGSVVGSVTALLFAPKAGKELRKDIAEGTAEAAHKVQEIAGAASDKGTEL 63
          +TK  L G L G +VG+  ALL APK+GKELR DI++    A  K  +   +A +KG E 
Sbjct: 5  NTKDFLIGTLIGGIVGASAALLLAPKSGKELRSDISDQAQIAREKTSQFTSSAYEKGNEW 64

Query: 64 YSKAKD 69
           S AK+
Sbjct: 65 ASIAKE 70


>lin1642 [R] COG4980 Gas vesicle protein
          Length = 174

 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 29/65 (44%), Positives = 38/65 (58%)

Query: 4  DTKSLLWGILAGSVVGSVTALLFAPKAGKELRKDIAEGTAEAAHKVQEIAGAASDKGTEL 63
          +TK  L G L G++VGS  ALLFAPK+GKELR+D+         K  +    A +KG E+
Sbjct: 8  NTKDFLIGGLIGAIVGSAAALLFAPKSGKELREDLNTQVDTIKEKGNQWKDVAYEKGIEI 67

Query: 64 YSKAK 68
             AK
Sbjct: 68 SGVAK 72


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.306    0.124    0.333 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 8,529,174
Number of extensions: 231240
Number of successful extensions: 561
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 561
Number of HSP's successfully gapped: 4
Length of query: 158
Length of database: 38,378,431
Length adjustment: 98
Effective length of query: 60
Effective length of database: 27,075,699
Effective search space: 1624541940
Effective search space used: 1624541940
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (22.0 bits)
S2: 111 (47.4 bits)