BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0291.0003.p (240 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value MA1106 [V] COG1131 ABC-type multidrug transport system, ATPase c... 269 3e-72 PH1230 [V] COG1131 ABC-type multidrug transport system, ATPase c... 114 2e-25 PAB1696 [V] COG1131 ABC-type multidrug transport system, ATPase ... 110 2e-24 CAC0268 [V] COG1131 ABC-type multidrug transport system, ATPase ... 108 5e-24 CAC0147 [V] COG1131 ABC-type multidrug transport system, ATPase ... 107 2e-23 >MA1106 [V] COG1131 ABC-type multidrug transport system, ATPase component Length = 235 Score = 269 bits (687), Expect = 3e-72, Method: Compositional matrix adjust. Identities = 133/235 (56%), Positives = 175/235 (74%) Query: 6 LQLILDNIRKSFDNKTVLKGIDFTFEQGKIYGLLGRNGAGKTSLFNCLSGETRMDSGGAF 65 ++LIL++I KSFD K VL+G F FE+G+IYGLLGRNG+GKT+LFNC++ + R+D G Sbjct: 1 MKLILNDIVKSFDKKEVLRGASFAFEKGEIYGLLGRNGSGKTTLFNCINEDLRIDGGSIL 60 Query: 66 LRRNEVSLPLREEEIGYVFSLPILPEFLTGYEFVKFYMDINQDKIQSGRTIDGYFDIIRF 125 L N V + ++IGYV S P++PEFLTG EF+KF++DIN I + ID YFD I Sbjct: 61 LEENGVKREVCPDDIGYVLSTPVVPEFLTGREFLKFFLDINVKNIPDIKPIDEYFDFIMI 120 Query: 126 EQEDRHRLIKGYSHGMKNKIQMLCFIITRPPLILLDEPLTSFDVVVALEIKKLLREMKQD 185 EDR RL+K YSHGMKNK+QML I P ++LLDEPLTSFDVVVA E+K LLR++K+D Sbjct: 121 GSEDRDRLLKDYSHGMKNKMQMLVNFIANPGILLLDEPLTSFDVVVADEMKTLLRQIKKD 180 Query: 186 HIIIFSTHILQLAADLCDELVILNNGVLQEIPADTLHSPEFEEQIIALLKDGSHD 240 HIIIFSTHI++LA DLCDE+VIL+ GVL+++ D L + F+++II L+ D Sbjct: 181 HIIIFSTHIMELALDLCDEIVILSGGVLEKMEKDGLSNEAFKDRIIQALRRDESD 235 >PH1230 [V] COG1131 ABC-type multidrug transport system, ATPase component Length = 253 Score = 114 bits (284), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 85/238 (35%), Positives = 132/238 (55%), Gaps = 26/238 (10%) Query: 8 LILDNIRKSFDNKTVLKGIDFTFEQGKIYGLLGRNGAGKTSLFNCLSG-----ETRMDSG 62 +I++N+RK F +K VLKGI+FT G+IYGLLG NG+GK++ LSG E ++ Sbjct: 2 IIVENLRKKFGSKEVLKGINFTVNDGEIYGLLGPNGSGKSTTMRILSGIITDFEGKVMVA 61 Query: 63 GAFLRRNEVSLPLREEEI-GYVFSLPILPEFLTGYEFVKFY-------MDINQDKIQSGR 114 G + R+ P++ +EI GYV P L E LT EF F DI +++++ R Sbjct: 62 GVDVSRD----PMKVKEIVGYVPETPALYESLTPAEFFSFIGGVRRIPQDILEERVK--R 115 Query: 115 TIDGYFDIIRFEQEDRHRLIKGYSHGMKNKIQMLCFIITRPPLILLDEPLTSFDVVVALE 174 +D F I ++ ++LI S G K KI ++ ++ P +++LDE + D A Sbjct: 116 LVDA-FGIGKY----MNQLIGTLSFGTKQKISLISALLHDPQVLILDEAMNGLDPKSARI 170 Query: 175 IKKLLREMKQD-HIIIFSTHILQLAADLCDELVILNNG-VLQEIPADTLHSPEFEEQI 230 ++LL E K++ I+FSTHIL LA +CD + I+ G ++ E D L EE++ Sbjct: 171 FRELLFEFKEEGKSIVFSTHILALAEVMCDRIGIIYEGRIVAEGTIDELREIAREEKL 228 >PAB1696 [V] COG1131 ABC-type multidrug transport system, ATPase component Length = 253 Score = 110 bits (275), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 82/238 (34%), Positives = 130/238 (54%), Gaps = 26/238 (10%) Query: 8 LILDNIRKSFDNKTVLKGIDFTFEQGKIYGLLGRNGAGKTSLFNCLSG-----ETRMDSG 62 +I++N+RK F K VLKGI FT + G+IYGLLG NG+GK++ LSG E ++ G Sbjct: 2 IIVENLRKRFGGKEVLKGISFTVKDGEIYGLLGPNGSGKSTTMRILSGIITDFEGKVIVG 61 Query: 63 GAFLRRNEVSLPLREEEI-GYVFSLPILPEFLTGYEFVKFY-------MDINQDKIQSGR 114 G + ++ PL+ + I GYV P L E LT EF F DI ++++ R Sbjct: 62 GVEVAKD----PLQVKRIVGYVPETPALYESLTPAEFFSFVGGVRGIPKDILEERV---R 114 Query: 115 TIDGYFDIIRFEQEDRHRLIKGYSHGMKNKIQMLCFIITRPPLILLDEPLTSFDVVVALE 174 + F+I ++ ++LI S G K KI ++ ++ P +++LDE + D A Sbjct: 115 KLVEAFEIKKY----MNQLIGTLSFGTKQKISLISSLLHDPKVLILDEAMNGLDPKSARI 170 Query: 175 IKKLLREMKQD-HIIIFSTHILQLAADLCDELVILNNG-VLQEIPADTLHSPEFEEQI 230 ++LL E K++ I+FSTH+L LA +CD + I+ G ++ E + L EE++ Sbjct: 171 FRELLYEFKEEGKSIVFSTHVLALAELICDRVGIIYQGRIIAEGTVEELKEISKEERL 228 >CAC0268 [V] COG1131 ABC-type multidrug transport system, ATPase component Length = 258 Score = 108 bits (271), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 67/211 (31%), Positives = 116/211 (54%), Gaps = 18/211 (8%) Query: 12 NIRKSFDNKT-VLKGIDFTFEQGKIYGLLGRNGAGKTSLFNCLSGETRMDSG-----GAF 65 N+ KS++ K + ++FT G+I+G LG NGAGK++ ++G + DSG G Sbjct: 20 NVNKSYNGKNKAVDNLNFTINSGEIFGFLGPNGAGKSTTIKMITGIIKADSGEIKVDGLN 79 Query: 66 LRRNEVSLPLREEEIGYVFSLPILPEFLTGYEFVKFYMDI----NQDKIQSGRTIDGYFD 121 ++ N + + +IGYV P + L G E++ F DI D+ + ++ YFD Sbjct: 80 IKENPIEA---KRKIGYVPDSPDMFLRLKGIEYLNFMADIYDVTTSDRKERIESLSKYFD 136 Query: 122 IIRFEQEDRHRLIKGYSHGMKNKIQMLCFIITRPPLILLDEPLTSFDVVVALEIKKLLRE 181 + +D+ I+ YSHGM+ KI ++ +I P + +LDEP+T D + +K+++R+ Sbjct: 137 M-ESALDDK---IQSYSHGMRQKIVVMGALIHDPDVWILDEPMTGLDPKASYNLKEMMRK 192 Query: 182 -MKQDHIIIFSTHILQLAADLCDELVILNNG 211 + FSTH+L++A LCD + I++ G Sbjct: 193 HADSGKTVFFSTHVLEVAEKLCDRIGIVSKG 223 >CAC0147 [V] COG1131 ABC-type multidrug transport system, ATPase component Length = 318 Score = 107 bits (267), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 73/244 (29%), Positives = 124/244 (50%), Gaps = 25/244 (10%) Query: 8 LILDNIRKSFDNKTVLKGIDFTFEQGKIYGLLGRNGAGKTSLFNCLSGETRMDSGGAFLR 67 L + ++ K NK ++KGI F+ ++G+I G LGRNGAGKT+ L G D G + Sbjct: 5 LEVTDLYKKLGNKEIIKGISFSIKEGEILGFLGRNGAGKTTTIKMLVGLITPDKGSVMIS 64 Query: 68 RNEVSLPLRE--EEIGYVFSLPILPEFLTGY----EFVKFYMDINQDKIQS-GRTI--DG 118 ++++ E +G V P L +LTG + +FY DI ++ I+ G T+ G Sbjct: 65 GHDITKEAEEALSCVGAVVENPELYSYLTGRQNLEQVARFYKDITKEDIEKIGNTVGLSG 124 Query: 119 YFDIIRFEQEDRHRLIKGYSHGMKNKIQMLCFIITRPPLILLDEPLTSFDVVVALEIKKL 178 D +K YS GMK ++ + +I++P L++LDEP D +E + L Sbjct: 125 RLD----------EKVKKYSLGMKQRLGLAEALISKPKLLILDEPTNGLDPTGIIEFRNL 174 Query: 179 L-REMKQDHIIIF-STHILQLAADLCDELVILNNGVLQEIP----ADTLHSPEFEEQIIA 232 L ++ K++ + IF S+HIL LCD + ++ G+++ + H E E ++ Sbjct: 175 LKKQAKENKMAIFVSSHILSEIEQLCDRVAFIDGGIIKSFETLKGTNKDHKTESFENVVI 234 Query: 233 LLKD 236 + K+ Sbjct: 235 MTKE 238 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.324 0.144 0.413 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 17,741,143 Number of extensions: 743632 Number of successful extensions: 16983 Number of sequences better than 1.0e-05: 1382 Number of HSP's gapped: 15921 Number of HSP's successfully gapped: 1459 Length of query: 240 Length of database: 38,378,431 Length adjustment: 103 Effective length of query: 137 Effective length of database: 26,499,029 Effective search space: 3630366973 Effective search space used: 3630366973 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 114 (48.5 bits)