BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0290.0081.p
         (748 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CAC2107 [N] COG5492 Bacterial surface proteins containing Ig-lik...    51   7e-06

>CAC2107 [N] COG5492 Bacterial surface proteins containing Ig-like domains
          Length = 439

 Score = 51.2 bits (121), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 43/125 (34%), Positives = 69/125 (55%), Gaps = 18/125 (14%)

Query: 166 WTSSNPNVLTIE-DGKITLVGEGKSTITA-KYKGLTATFKAVVQLPYSAIVLKDKAKDTA 223
           WTSS+PNV+T++ +GK+T V EGK+TITA    G   + +  + +  S  +  +K  D+ 
Sbjct: 236 WTSSDPNVVTVDSNGKVTAVKEGKATITAVTQDGSNLSVQCTINVINSTTISLNKTTDS- 294

Query: 224 VKEMELLVGDSPVQLSAMTKATESSPEKDIAADANWTTSNESIAKVD-AGKITIEGTGKA 282
                + VG +   L+ ++ +TE            WT+S+ S+  VD +GKIT    G+A
Sbjct: 295 -----INVGQTDNLLADVSPSTEG---------VTWTSSDSSVVTVDGSGKITGVKEGQA 340

Query: 283 VITAS 287
            ITA+
Sbjct: 341 TITAA 345


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.308    0.124    0.331 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 46,637,473
Number of extensions: 1740194
Number of successful extensions: 4887
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 4880
Number of HSP's successfully gapped: 7
Length of query: 748
Length of database: 38,378,431
Length adjustment: 114
Effective length of query: 634
Effective length of database: 25,230,355
Effective search space: 15996045070
Effective search space used: 15996045070
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 120 (50.8 bits)