BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0290.0079.p
         (147 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ML2698 [LR] COG0494 NTP pyrophosphohydrolases including oxidativ...    69   2e-12
MT3063_1 [LR] COG0494 NTP pyrophosphohydrolases including oxidat...    58   6e-09
Rv2985_1 [LR] COG0494 NTP pyrophosphohydrolases including oxidat...    58   6e-09
aq_1586 [C] COG0711 F0F1-type ATP synthase, subunit b                  55   3e-08
aq_1585 [M] COG4591 ABC-type transport system, involved in lipop...    55   3e-08

>ML2698 [LR] COG0494 NTP pyrophosphohydrolases including oxidative damage
           repair enzymes
          Length = 673

 Score = 69.3 bits (168), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 4/114 (3%), Positives = 14/114 (12%), Gaps = 10/114 (8%)

Query: 7   QISAGGVVYRQGADGLEVQLI------VDRYGRI--ALPKGKMEQGETVEETALREIREE 58
                G         +              Y  +         +  + +           
Sbjct: 67  VGQTLGRKE-ARGLMISTFHTLGLDIIKREYAALGMKANFSLFDDTDQLALLKELTEGLI 125

Query: 59  TGTVGAIKAPIDVIKYTFQHPVHGLVNKEVHYFLVESVGGETKAQTEEINAVEW 112
                 ++  I  I       +                         + +    
Sbjct: 126 EDDKVLLQQLISTISNWKN-DLKTPSQAAASAIGERDRIFAHCYGLYDAHLKAC 178


>MT3063_1 [LR] COG0494 NTP pyrophosphohydrolases including oxidative damage
           repair enzymes
          Length = 673

 Score = 57.8 bits (138), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 3/102 (2%), Positives = 18/102 (17%), Gaps = 7/102 (6%)

Query: 9   SAGGVVYRQGADGLE--VQLIV---DRYGRIALPKGKMEQGETVEETALREIREETGTVG 63
                        +   +  ++       R         +     +  + +        G
Sbjct: 19  LVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVGQTLGRKEARG 78

Query: 64  AIKAPIDVIKYTFQHPVHGLVNKEVHYFLVESVGGETKAQTE 105
            + +    +        +      +          +  A  +
Sbjct: 79  LMISTFHTLGLDIIKREYAA--LGMKANFSLFDDTDQLALLK 118


>Rv2985_1 [LR] COG0494 NTP pyrophosphohydrolases including oxidative damage
           repair enzymes
          Length = 673

 Score = 57.8 bits (138), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 3/102 (2%), Positives = 18/102 (17%), Gaps = 7/102 (6%)

Query: 9   SAGGVVYRQGADGLE--VQLIV---DRYGRIALPKGKMEQGETVEETALREIREETGTVG 63
                        +   +  ++       R         +     +  + +        G
Sbjct: 19  LVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVGQTLGRKEARG 78

Query: 64  AIKAPIDVIKYTFQHPVHGLVNKEVHYFLVESVGGETKAQTE 105
            + +    +        +      +          +  A  +
Sbjct: 79  LMISTFHTLGLDIIKREYAA--LGMKANFSLFDDTDQLALLK 118


>aq_1586 [C] COG0711 F0F1-type ATP synthase, subunit b
          Length = 211

 Score = 55.5 bits (132), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 10/136 (7%), Positives = 29/136 (21%), Gaps = 11/136 (8%)

Query: 6   KQISAGGVVYRQGADGLEVQLIVDRYGRIALPKGKMEQGETVEETALREIREETGTVGAI 65
           K      +   +                 +  +  +    + + T +   +         
Sbjct: 3   KAKRLEILTRLRE----NNPHPTTELNFSSPFELLIAVLLSAQATDVSVNKATAKLYPVA 58

Query: 66  KAPIDVIKYTFQHPVHG-LVNKEVHYFLVESVGGETKAQTEEINAVEWHDPAAAWIRGTG 124
             P  +++   +       +     Y        +T     E +  E  +  AA      
Sbjct: 59  NTPAAMLELGVE--GVKTYIKTIGLYNSKAENIIKTCRILLEQHNGEVPEDRAALEA--- 113

Query: 125 NSYSNNIQVLRKALSL 140
                  +     L+ 
Sbjct: 114 -LPGVGRKTANVVLNT 128


>aq_1585 [M] COG4591 ABC-type transport system, involved in lipoprotein
           release, permease component
          Length = 134

 Score = 55.5 bits (132), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 47/136 (34%), Positives = 68/136 (50%), Gaps = 11/136 (8%)

Query: 6   KQISAGGVVYRQGADGLEVQLIVDRYGRIALPKGKMEQGETVEETALREIREETGTVGAI 65
           K+ SAGGV+++ G    EV LI       + PKG +E GE  EETA+RE+ EETG  G I
Sbjct: 3   KEFSAGGVLFKDG----EVLLIKTPSNVWSFPKGNIEPGEKPEETAVREVWEETGVKGEI 58

Query: 66  KAPIDVIKYTFQHPVHG-LVNKEVHYFLVESVGGETKAQTEEINAVEWHDPAAAWIRGTG 124
              I  I Y +   + G  + K V Y+L++   GE +   E  +A  +    A  +    
Sbjct: 59  LDYIGEIHYWYT--LKGERIFKTVKYYLMKYKEGEPRPSWEVKDAKFFPIKEAKKLL--- 113

Query: 125 NSYSNNIQVLRKALSL 140
             Y  + ++  KAL L
Sbjct: 114 -KYKGDKEIFEKALKL 128


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.315    0.133    0.378 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 10,969,978
Number of extensions: 449615
Number of successful extensions: 789
Number of sequences better than 1.0e-05: 11
Number of HSP's gapped: 789
Number of HSP's successfully gapped: 11
Length of query: 147
Length of database: 38,378,431
Length adjustment: 96
Effective length of query: 51
Effective length of database: 27,306,367
Effective search space: 1392624717
Effective search space used: 1392624717
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 111 (47.4 bits)