BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0290.0076.p
         (212 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BS_ywhC [R] COG1994 Zn-dependent proteases                            113   3e-25
CAC2628 [R] COG1994 Zn-dependent proteases                             62   6e-10

>BS_ywhC [R] COG1994 Zn-dependent proteases
          Length = 219

 Score =  113 bits (282), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 64/165 (38%), Positives = 84/165 (50%), Gaps = 3/165 (1%)

Query: 4   LDRILVYPLQQLPFFLITIVIAFTVHEFAHAYFANKFGDPTARLLGRMTLNPAVHXXXXX 63
           +DR L YPL  +P+ +IT++++FT+HE AHAY A KFGD TA+  GR+TLNP  H     
Sbjct: 1   MDRFLYYPLSLMPYLVITLIVSFTMHELAHAYVAYKFGDDTAKKQGRLTLNPIKHLDPFG 60

Query: 64  XXXXXXXXXXWARPVPVNRDNFSRPRLMGVIVSAAGPLSNFXXXXXXXXXXXXXXXTGVM 123
                     WARP+PVNR  F +PRL GV+VS AGP+SN                 G M
Sbjct: 61  TILILVAGFGWARPIPVNRRFFKKPRLAGVLVSIAGPVSNLILAFIGFFLLVLMHAYG-M 119

Query: 124 DSIANEQLLRAVYWFFGMXXXXXXXXXXXXXXXXXXXDGYRIVED 168
           + +A       +  FF +                   DGYRI+ED
Sbjct: 120 EMLAAFS--TGLDQFFSIWIQLNLVLFLFNLLPLPPLDGYRIIED 162


>CAC2628 [R] COG1994 Zn-dependent proteases
          Length = 216

 Score = 62.0 bits (149), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 35/96 (36%), Positives = 49/96 (51%), Gaps = 4/96 (4%)

Query: 8   LVYPLQQLPFFLITIVIAFTVHEFAHAYFANKFGDPTARLLGRMTLNPAVHXXXXXXXXX 67
           ++Y L  +P     ++I FT HE+AHA  A+K GD T R  GR+TLNP  H         
Sbjct: 7   IIYRLIMIP----AVLIGFTFHEYAHAIVADKLGDKTPRFQGRITLNPMAHLDPFGFAAI 62

Query: 68  XXXXXXWARPVPVNRDNFSRPRLMGVIVSAAGPLSN 103
                 +A+PV  N   +   R   + VS AGP++N
Sbjct: 63  ILVGFGYAKPVQTNPAAYKNYRRDDLKVSIAGPIAN 98


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.330    0.144    0.447 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 10,844,892
Number of extensions: 320909
Number of successful extensions: 352
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 349
Number of HSP's successfully gapped: 3
Length of query: 212
Length of database: 38,378,431
Length adjustment: 102
Effective length of query: 110
Effective length of database: 26,614,363
Effective search space: 2927579930
Effective search space used: 2927579930
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 113 (48.1 bits)