BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0290.0058.p
         (196 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

alr2445 [O] COG0576 Molecular chaperone GrpE (heat shock protein)      99   4e-21
CAC1281 [O] COG0576 Molecular chaperone GrpE (heat shock protein)      94   9e-20
STM0850 [EP] COG0601 ABC-type dipeptide/oligopeptide/nickel tran...    86   4e-17
BU252 [O] COG0576 Molecular chaperone GrpE (heat shock protein)        55   6e-08

>alr2445 [O] COG0576 Molecular chaperone GrpE (heat shock protein)
          Length = 359

 Score = 99.0 bits (245), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 5/138 (3%), Positives = 21/138 (15%), Gaps = 1/138 (0%)

Query: 59  DEYQGRVLRVQADFDNFRRRTQKEKEELAQYATSKLVGELLPVLDNFERAIATV-PATPE 117
            ++    +  +         +  E   +     + +    +                   
Sbjct: 92  AQHFHTAVHNEEQLAALEEASLDEPVTVWMKLDTGMHRLGVRPEQAEAFYHRLTQCKNVR 151

Query: 118 FEAFNKGVNMIFQQLEGVLKSEGLAAMETVGQPFNPEYHQAIMQXXXXXXXXXXXXXXXQ 177
                        + +     + LA   T  +    +   A                   
Sbjct: 152 QPVNIVSHFARADEPKCGATEKQLAIFNTFCEGKPGQRSIAASGGILLWPQSHFDWVRPG 211

Query: 178 KGYLLKDKVLRPAMVKVS 195
                   +   +     
Sbjct: 212 IILYGVSPLEDRSTGADF 229


>CAC1281 [O] COG0576 Molecular chaperone GrpE (heat shock protein)
          Length = 200

 Score = 94.4 bits (233), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 53/143 (37%), Positives = 79/143 (55%), Gaps = 4/143 (2%)

Query: 53  RLQELADEYQGRVLRVQADFDNFRRRTQKEKEELAQYATSKLVGELLPVLDNFERAIATV 112
           +L+   D  + R+LR+ A+++N+R RT KEKE +   A S ++ E+LP LDN ERA +T 
Sbjct: 61  KLKNELDAAKDRLLRLSAEYENYRNRTAKEKEGIYTDACSDVINEMLPTLDNLERAASTE 120

Query: 113 PATPEFEAFNKGVNMIFQQLEGVLKSEGLAAMETVGQPFNPEYHQAIMQXXXXXXXXXXX 172
            +    E   KGV M+ +Q +  L   G+  + + G+ F+P  H A+M            
Sbjct: 121 GSA---EDIKKGVEMVVKQFKNSLSKLGIEEIPSEGK-FDPNLHNAVMHIEDEGYGENEV 176

Query: 173 XXXXQKGYLLKDKVLRPAMVKVS 195
               QKGY   DKVLR +MVKV+
Sbjct: 177 VEVLQKGYKRGDKVLRHSMVKVA 199


>STM0850 [EP] COG0601 ABC-type dipeptide/oligopeptide/nickel transport
           systems, permease components
          Length = 306

 Score = 85.9 bits (211), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 10/143 (6%), Positives = 29/143 (20%), Gaps = 4/143 (2%)

Query: 54  LQELADEYQGRVLRVQADFDNFRRRTQKEKEELAQYATSKLVGELLPVLDNFERAIATVP 113
           L  +A      V  +  D        + + + +A       + + L V            
Sbjct: 16  LLIVAVLVFLFVHLLPGDPARLIAGPEADAQVIALVRQQLGLDQPLHVQFWHYITHVL-- 73

Query: 114 ATPEFEAFNKGVNMIFQQLEGVLKSEGLAAMETVGQPFNPEYHQAIMQXXXXXXXXXXXX 173
              +F         + +++           + T             +             
Sbjct: 74  -QGDFGTSMVSRRPVSEEIASRFLPTLWLTI-TSMIWAVLFGMAIGIAAAVWRNRWPDRL 131

Query: 174 XXXQKGYLLKDKVLRPAMVKVSM 196
                   +        M+ + +
Sbjct: 132 GMTLAVTGISFPAFALGMLLMQI 154


>BU252 [O] COG0576 Molecular chaperone GrpE (heat shock protein)
          Length = 194

 Score = 55.5 bits (132), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 35/125 (28%), Positives = 55/125 (44%), Gaps = 5/125 (4%)

Query: 76  RRRTQKEKEELAQYATSKLVGELLPVLDNFERAIATVPATP----EFEAFNKGVNMIFQQ 131
             R  KE E+  +++  K++ + LP++DN ERA+  +        ++    K +  I   
Sbjct: 66  HNRFNKEIEKSIKFSLEKIIIDFLPIIDNIERALNLIETINLKQEKYTEILKKLQFICNL 125

Query: 132 LEGVLKSEGLAAMETVGQPFNPEYHQAIMQXXXXXXXXXXXXXXXQKGYLL-KDKVLRPA 190
           LE       +  +      FNP  HQA+                 Q GY+L K ++LRPA
Sbjct: 126 LEKFFYLFNIKKINDTNVLFNPSIHQAMSIHYTNDIISNQIVTVMQSGYILHKSRLLRPA 185

Query: 191 MVKVS 195
           MV VS
Sbjct: 186 MVVVS 190


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.315    0.132    0.355 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 10,333,096
Number of extensions: 325244
Number of successful extensions: 658
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 653
Number of HSP's successfully gapped: 4
Length of query: 196
Length of database: 38,378,431
Length adjustment: 101
Effective length of query: 95
Effective length of database: 26,729,697
Effective search space: 2539321215
Effective search space used: 2539321215
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 113 (48.1 bits)