BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0290.0014.p (581 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BH0792 [T] COG2972 Predicted signal transduction protein with a ... 136 1e-31 BS_yesM [T] COG2972 Predicted signal transduction protein with a... 132 1e-30 BH2110 [T] COG2972 Predicted signal transduction protein with a ... 132 2e-30 BH1909 [T] COG2972 Predicted signal transduction protein with a ... 124 3e-28 SPy1588 [T] COG2972 Predicted signal transduction protein with a... 123 7e-28 >BH0792 [T] COG2972 Predicted signal transduction protein with a C-terminal ATPase domain Length = 587 Score = 136 bits (342), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 76/258 (29%), Positives = 139/258 (53%), Gaps = 3/258 (1%) Query: 312 VSLLLRSLNRMKEGRWSTRIHT-RTNPEFTMLNEEFNEMAEKIQSLIEQVYLEQLRAKDA 370 V+ L++++ ++ G+ S RI T + + M++ FNE ++++ IE+VY +L+ +A Sbjct: 314 VNDLVQTMKEVQSGQLSVRIETGNVDDDLAMISNTFNETLDELEDYIEKVYFSKLKQTEA 373 Query: 371 HLKQLQSQINPHFLYNCLFFIKSKAVVGDTGSVEAMALNLGEYYRYITKADHSLTTLQDE 430 L LQSQINPHFLYN L I+ K++ + M + L +RY K+ L T+ DE Sbjct: 374 ELANLQSQINPHFLYNTLEAIRMKSLSEGGRTTAKMIVQLSYLFRYSLKS-ADLVTIGDE 432 Query: 431 LKLLENYLEIQNLR-KQRICYEMDIADDLLGLHIPRLLIQPLVENSIIHGIEKKIGQGFI 489 L+ +E Y+E+ N+R ++ +++ + + +P ++QPL+EN +IHG +++ I Sbjct: 433 LQHVEQYVELFNIRFPNQLTFQVAVEEKHKHYVVPPFILQPLIENFLIHGFKRERDDNQI 492 Query: 490 RITASXXXXXXXXXXXDNGAGMTSEAIASLHARMSEPTREDGGCGLWNIQQRLKTHYGDS 549 I DNG G+ + + ++ R+S GL+N+ QRL+ YG+ Sbjct: 493 NIIIQEKEQTLQIQIMDNGKGIPRKKVEEINERLSMTENSSHSIGLFNVNQRLRLRYGER 552 Query: 550 SGLLIAPSSEGGLQITLR 567 G+ + + +T+R Sbjct: 553 FGVSVQSEPDVCTIVTIR 570 >BS_yesM [T] COG2972 Predicted signal transduction protein with a C-terminal ATPase domain Length = 577 Score = 132 bits (333), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 93/327 (28%), Positives = 145/327 (44%), Gaps = 14/327 (4%) Query: 252 FLVSSVPSSAINWQVVHYSPLKQILQPIRSSRYSFLTGXXXXXXXXXXXXXXXYRQVQRP 311 + +S + SS NW + P Q+ I + T + P Sbjct: 258 YFISYLQSSYQNWSYYNVIPFDQMFAKISFMKTVIGTCFLLFFCVVLLFGRKIANSITEP 317 Query: 312 VSLLLRSLNRMK----EGRWSTRIHTRTNPEFTMLNEEFNEMAEKIQSLIEQVYLEQLRA 367 + L+ ++ ++ E S + T E MLN F M ++I L+E+ +QL Sbjct: 318 IEQLVTAMKSVQHSGIEAGVSLSLPEHTQDEAGMLNRHFTVMMKRINELMEENVEKQLII 377 Query: 368 KDAHLKQLQSQINPHFLYNCLFFIKSKAVVGDTGSVEAMALNLGEYYRYITKADHSLTTL 427 K+ LK LQ+QINPHFLYN L I A + M +LG R + T+ Sbjct: 378 KETELKALQAQINPHFLYNTLESINWLAKANQQKQISKMVESLGFLLRNSIHMKKDIVTI 437 Query: 428 QDELKLLENYLEIQNLR-KQRICYEMDIADDLLGLHIPRLLIQPLVENSIIHGIEKKIGQ 486 Q+E ++ +Y+ IQ R ++R+ + +DI D++ IP+L +QPL EN+I + +E Sbjct: 438 QEEADIVRHYMTIQRFRFEERLKFTLDIDDEVKHCLIPKLTLQPLAENAIQYALEPFTRP 497 Query: 487 GFIRITASXXXXXXXXXXXDNGAGMTSEAIASLHARMSEPTREDGGCGLWNIQQRLKTHY 546 IRI A DNG GM + S R G GLWNI++R+ + Sbjct: 498 CAIRIQAKKAKGCVCITVEDNGPGMDGRILESTGGR---------GIGLWNIRERISLTF 548 Query: 547 GDSSGLLIAPSSEGGLQITLRMEKKEE 573 G+ GL I E G +I + + + E Sbjct: 549 GEPYGLRIHSEHEKGTRIVITIPCRNE 575 >BH2110 [T] COG2972 Predicted signal transduction protein with a C-terminal ATPase domain Length = 585 Score = 132 bits (331), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 88/266 (33%), Positives = 128/266 (48%), Gaps = 10/266 (3%) Query: 315 LLRSLNRMKEGRWSTRIHTRTNPEFTMLNEEFNEMAEKIQSLIEQVYLE-------QLRA 367 +L+ + RMK+ ++ E L EFN+M++ I LI +VY QLR Sbjct: 315 VLKHMKRMKKQKFDIINFPGDKDEIGELTNEFNKMSQTINRLINEVYASNIEKKDLQLRE 374 Query: 368 KDAHLKQLQSQINPHFLYNCLFFIKSKAVVGDTGSVEAMALNLGEYYRYITKADHSLTTL 427 K A L LQSQINPHFL+N L I+ ++++ + N+ + +R T+ Sbjct: 375 KQAQLSALQSQINPHFLFNALETIRMRSMIKGEKETAKIIQNMAKIFRNSLTWGKDWVTV 434 Query: 428 QDELKLLENYLEIQNLR-KQRICYEMDIADDLLGLHIPRLLIQPLVENSIIHGIEKKIGQ 486 +DEL L+ +LEIQ R ++ YE+DI ++ IP ++ P VEN+ IHGIE + Sbjct: 435 RDELCLIICFLEIQKYRFGDKMEYELDIDEEAYDYIIPNMVFLPFVENASIHGIESVKEK 494 Query: 487 GFIRITASXXXXXXXXXXXDNGAGMTSEAIASLHARMSEPTREDGGCGLWNIQQRLKTHY 546 G I+I DNGAGM E +ASL + G+ N+ RLK HY Sbjct: 495 GIIQIRVEKNDGEIVYEISDNGAGMDEEKLASLIETLKNEENMGENVGIKNVYYRLKLHY 554 Query: 547 GDSSGLLIA--PSSEGGLQITLRMEK 570 + I P +QI L EK Sbjct: 555 KNHFDFSINSRPGQGTTVQIKLPAEK 580 >BH1909 [T] COG2972 Predicted signal transduction protein with a C-terminal ATPase domain Length = 597 Score = 124 bits (312), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 83/263 (31%), Positives = 131/263 (49%), Gaps = 9/263 (3%) Query: 308 VQRPVSLLLRSLNRMKEGRWSTRIHTRTNPEFTMLNEEFNEMAEKIQSLIEQVY------ 361 + + +S L +N++ G T+I E L+ +FN+M ++SLI QV+ Sbjct: 319 ISKRLSHLSERINQVASGDLKTKIVVDGKDEIGQLSVQFNQMVANLRSLIHQVHETNRQK 378 Query: 362 -LEQLRAKDAHLKQLQSQINPHFLYNCLFFIKSKAVVGDTGSVEAMALNLGEYYRYITKA 420 L + + LK L SQINPHFL+N L I+ K+ + + + LG+ R + Sbjct: 379 RLLEKSQNEIKLKMLASQINPHFLFNTLESIRMKSHMKGETEIAKVVKQLGKLMRKSLEV 438 Query: 421 DHSLTTLQDELKLLENYLEIQNLR-KQRICYEMDIADDLLGLHIPRLLIQPLVENSIIHG 479 L++EL ++ YLEIQ R R+ YE+ I + I L+IQPLVEN++IHG Sbjct: 439 TGHHIPLRNELDMVRCYLEIQTFRYGDRLHYELYIDPQSEMVEILPLIIQPLVENAVIHG 498 Query: 480 IEKKIGQGFIRITASXXXXXXXXXXXDNGAGMTSEAIASLHARMSEPTREDGG-CGLWNI 538 +E+ G + I+ D+G GM E + ++ + P DG GL N+ Sbjct: 499 LERTEDGGTVTISTIVNGNDLTVIVNDDGCGMDEEKLEAIQNMLHHPQEVDGNKIGLLNV 558 Query: 539 QQRLKTHYGDSSGLLIAPSSEGG 561 +RL+ YG +SGL+I + G Sbjct: 559 HKRLQLTYGKTSGLIIESAKGKG 581 >SPy1588 [T] COG2972 Predicted signal transduction protein with a C-terminal ATPase domain Length = 574 Score = 123 bits (309), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 80/269 (29%), Positives = 131/269 (48%), Gaps = 4/269 (1%) Query: 305 YRQVQRPVSLLLRSLNRMKEGRWSTRI-HTRTNPEFTMLNEEFNEMAEKIQSLIEQVYLE 363 +R + VS + ++ + G S I ++ E ++E N+M I++ I++VY+ Sbjct: 305 FRNYIQQVSEITDTVEMVAAGDLSLTIDNSHMELELYHISEAINQMLASIKAYIDEVYVL 364 Query: 364 QLRAKDAHLKQLQSQINPHFLYNCLFFIKSKAVVGDTGSVEAMALNLGEYYRYITKADHS 423 ++ +DA ++ LQSQINPHFLYN L +I+ A+ + + R D Sbjct: 365 EVEQRDAQMRALQSQINPHFLYNTLEYIRMYALSCQQEELADVIYAFASLLRNNISQD-K 423 Query: 424 LTTLQDELKLLENYLEIQNLR-KQRICYEMDIADDLLGLHIPRLLIQPLVENSIIHGIEK 482 +TTL++EL E Y+ + +R Y + I + + L IP+ +IQPLVEN +HGI+ Sbjct: 424 MTTLKEELAFCEKYIYLYQMRYPDSFAYHVKIDESVADLAIPKFVIQPLVENYFVHGIDY 483 Query: 483 KIGQGFIRITASXXXXXXXXXXXDNGAGMTSEAIASLHARMSE-PTREDGGCGLWNIQQR 541 + I A DNG G++ E +A + R+ E T + GL N+ R Sbjct: 484 SRHDNALSIKALDETDHLLIQVLDNGRGISQERLADMEKRLQEHQTTGNSSIGLQNVYLR 543 Query: 542 LKTHYGDSSGLLIAPSSEGGLQITLRMEK 570 L H+ D +A GG I +R+ K Sbjct: 544 LFHHFRDRVSWSMAKEPNGGFIIQIRIRK 572 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.318 0.134 0.384 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 37,799,898 Number of extensions: 1394768 Number of successful extensions: 2421 Number of sequences better than 1.0e-05: 23 Number of HSP's gapped: 2377 Number of HSP's successfully gapped: 23 Length of query: 581 Length of database: 38,378,431 Length adjustment: 112 Effective length of query: 469 Effective length of database: 25,461,023 Effective search space: 11941219787 Effective search space used: 11941219787 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 119 (50.4 bits)