BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0290.0012.p
         (940 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

STM1848 [S] COG2995 Uncharacterized paraquat-inducible protein A      141   6e-33

>STM1848 [S] COG2995 Uncharacterized paraquat-inducible protein A
          Length = 427

 Score =  141 bits (355), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 0/617 (0%), Positives = 0/617 (0%), Gaps = 82/617 (13%)

Query: 348 ELHIPAGSSAAVDQLTGLVSDKSGAPWNDTVLADEVGA--LVARFSDRKAAESALAESSG 405
                        Q          A     + A+ +    +      ++    +   S  
Sbjct: 248 CPRCHIPLRLRRKQSIQKCWAALLASIVFLLPANLLPISVIYINGGRQEDTILSGIMSLA 307

Query: 406 FVRDYGKFLQVFTGDENFDVFVNRNLPFQVFYQTFVSRSFCQTQKGY-REIGFREI-QDL 463
                   +            V       +       +                      
Sbjct: 308 SSNIAVAAVVFIASILVPFTKVIVMFTLLLSIHFKCQQGLRTRILLLRLVTWIGRWSMLD 367

Query: 464 YASMYYFTGMGQSALVKSLLKEWTGMVFELGYAYHNFFWAGKEP-----GKWSDDALWLV 518
              +     +     +         M     Y                     D      
Sbjct: 368 LFVISLTMSLINRDQI-----LAFTMGPAAFYFGAAVILTILAVEWLDSRLLWDAHESGN 422

Query: 519 QAVYRYVMLTGDLEFLDESCPVAGQETSR-PVFETLKAVIVYSGWISVGRHGLPLLDYAD 577
                                                                       
Sbjct: 423 -                                                            481

Query: 578 WNDCLKLDDTYLNGPAKEERYRKQLQAGGVFGDPLDSDYSESVMNAFLLKVAVDELSILA 637
                                                                       
Sbjct: 482 ----------                                                   531

Query: 638 ARKGEQDYAAELDRFGAELRGRIQEHAWKDNFFARVLFNRYADGEYTYLGAAGDGLSSDP 697
                                                                       
Sbjct: 532 ------------                                                 579

Query: 698 AADGSYFLNSFSWSILSGC-ADEAQITVMLDTMKSHLMTPYGLKLVSP------VALGRV 750
                                                                       
Sbjct: 580                                                              639

Query: 751 SSHTASDEYFPGDRENGGVFKHXXXXXXXX---------XFKGAKEVSDAGLA--AELGR 799
                                                                       
Sbjct: 640 ------                                                       693

Query: 800 FGYWLLDRIMPFKTMEDPFAICGNPRFCTQYNNSETGENIGPMXXXXXXXXXXXXMEALG 859
                                                                       
Sbjct: 694 -----------------                                            736

Query: 860 IEYTAQGIALNPILREEQTELSYTLKLGGSSYCIRISKPEGFRRMQNGTARLTLDGRALE 919
                                                                       
Sbjct: 737 ---                                                          793

Query: 920 NGLVPTPDDGLTHEVEL 936
                            
Sbjct: 794                   810


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.319    0.137    0.415 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 70,605,460
Number of extensions: 3007118
Number of successful extensions: 5162
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 5157
Number of HSP's successfully gapped: 1
Length of query: 940
Length of database: 38,378,431
Length adjustment: 116
Effective length of query: 824
Effective length of database: 24,999,687
Effective search space: 20599742088
Effective search space used: 20599742088
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 121 (51.2 bits)