BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0290.0010.p (285 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value mll0851 [G] COG0395 ABC-type sugar transport system, permease co... 188 9e-48 AGc2592 [G] COG0395 ABC-type sugar transport system, permease co... 171 1e-42 BMEI1714 [G] COG0395 ABC-type sugar transport system, permease c... 164 1e-40 BS_yurM [G] COG0395 ABC-type sugar transport system, permease co... 164 1e-40 BH1246 [G] COG0395 ABC-type sugar transport system, permease com... 162 4e-40 >mll0851 [G] COG0395 ABC-type sugar transport system, permease component Length = 282 Score = 188 bits (477), Expect = 9e-48, Method: Compositional matrix adjust. Identities = 103/264 (39%), Positives = 162/264 (61%), Gaps = 6/264 (2%) Query: 22 VVVTIFPILWMIFTSLHSNDQILNGITTFSLPKPQWVNYVNMWDTVNFAIYFRNSLLICG 81 VV +FPI W + S+ + + TF + N+V + + +F YF NS+++ Sbjct: 25 VVFALFPIYWTLKISVTPERLLYSEGVTFWPSRMTLQNFVTVLEATDFPRYFLNSVIVSV 84 Query: 82 ATTLLAGAFAVLAGYALARFDFPGSKLFSMSIISTQLIPGIMFLFPIYLMFLWIKNTFGL 141 +T L A LAGYA++RF F G ++ ++ TQ P +M + PIY + I Sbjct: 85 STAALVTVTATLAGYAMSRFTFRGKAALALMLLLTQTFPLVMVIPPIYRVMGQIG----- 139 Query: 142 PMINTYWGMILVYTAFYTPISIWIMRGFFVSIPRDLEESAVIDGCSKFQAFYKIILPLSV 201 +IN+ G+I++YTAF T + ++M+ FF IP+DLEE+A+IDGC++ QA K+I+PL++ Sbjct: 140 -LINSLTGLIIIYTAFNTAFATFLMQSFFDGIPKDLEEAAMIDGCTRAQAMRKVIVPLTL 198 Query: 202 PGIIATGIFIFLTAWDELLFAWVLTTSSDVQTIPVGIRLFVGQYNTRYDLLMAASTVVTV 261 PG+ AT F+F AW ELLFA +L +S D +T VG+ F+G++ + +MAAS + + Sbjct: 199 PGMGATLGFVFTAAWSELLFALMLISSDDQKTFAVGLLTFIGKFAVDWGQMMAASILALI 258 Query: 262 PVMVIFFMTQKYFISGMTAGAVKG 285 PV + F Q+Y ++G+TAGAVKG Sbjct: 259 PVCIFFAFLQRYLVTGLTAGAVKG 282 >AGc2592 [G] COG0395 ABC-type sugar transport system, permease component Length = 218 Score = 171 bits (433), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 0/262 (0%), Positives = 0/262 (0%), Gaps = 12/262 (4%) Query: 27 FPILWMIFTSLHSNDQILNGITTFSLPKPQWVN---YVNMWDTVNFAIYFRNSLLICGAT 83 + + L T ++P D + Sbjct: 25 ILASSSASRQMLMRNAGL---TFSAIPADIDERALDEQLERDGASPEEVALELARAKALA 81 Query: 84 TLLAGAFAVLAGYALARFDFPGSKLFSMSIISTQLIPGIMFLFPIYLMFLWIKNTFGLPM 143 A++ G ++ + L + + Sbjct: 82 VSALHPEALVLGCDQTMALGTRVYHKPKNMAEAATHLLSLSGKVHRLNS------AAVLV 135 Query: 144 INTYWGMILVYTAFYTPISIWIMRGFFVSIPRDLEESAVIDGCSKFQAFYKIILPLSVPG 203 N V +A ++ + + + + ++ + Sbjct: 136 HNGKVVWQTVSSAELAVRTLSAEFVSRHLQRVGEKALSSVGAYQLEREGIQLFTSIEGDY 195 Query: 204 IIATGIFIFLTAWDELLFAWVLTTSSDVQTIPVGIRLFVGQYNTRYDLLMAASTVVTVPV 263 Sbjct: 196 255 Query: 264 MVIFFMTQKYFISGMTAGAVKG 285 Sbjct: 256 277 >BMEI1714 [G] COG0395 ABC-type sugar transport system, permease component Length = 294 Score = 164 bits (416), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 96/299 (32%), Positives = 161/299 (53%), Gaps = 38/299 (12%) Query: 5 RKRSVTSFLLTSLTWFIVVVTIFPILWMIFTSLHSNDQILNGITTFSLPKPQWV------ 58 R+R F L L + ++V P W++ +SL +I+ P W+ Sbjct: 16 RRRIARVFYLVGL-FLAMLVICLPGFWIVLSSLRPPVEIMA-------KPPVWIPQDISL 67 Query: 59 ------------NYVNMWDTVNFAIYFRNSLLICGATTLLAGAFAVLAGYALARFDFPGS 106 V +WD YFRNS+++ +T+++ + GYA ARF F G Sbjct: 68 DAYRTMFSGAGAGGVPVWD------YFRNSIIVSVTSTVVSLIIGMSGGYAFARFRFRGK 121 Query: 107 KLFSMSIISTQLIPGIMFLFPIYLMFLWIKNTFGLPMINTYWGMILVYTAFYTPISIWIM 166 + + T+ +PGI P+++++ I +I+T++G+IL Y A P + W++ Sbjct: 122 SATFLGFMLTRSVPGIALSLPLFMVYSRIG------IIDTHFGLILTYVALNIPFTTWLI 175 Query: 167 RGFFVSIPRDLEESAVIDGCSKFQAFYKIILPLSVPGIIATGIFIFLTAWDELLFAWVLT 226 GFF +P+DL E+A IDGC+++QAF+++ PL+ PGI + GIF FLT W+E A LT Sbjct: 176 DGFFRQVPKDLAEAAQIDGCTRWQAFWQVEFPLAGPGIASAGIFAFLTCWNEYALASQLT 235 Query: 227 TSSDVQTIPVGIRLFVGQYNTRYDLLMAASTVVTVPVMVIFFMTQKYFISGMTAGAVKG 285 S + +T+PVG+ + ++ + + A + V+ VP + + F+ QK+ +SG+T GAVKG Sbjct: 236 RSVNSKTLPVGLLDYTAEFTIDWRGMCALAVVMIVPALALTFVIQKHLVSGLTFGAVKG 294 >BS_yurM [G] COG0395 ABC-type sugar transport system, permease component Length = 300 Score = 164 bits (416), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 87/267 (32%), Positives = 156/267 (58%), Gaps = 14/267 (5%) Query: 22 VVVTIFPILWMIFTSLHSNDQILNGITTFSLP---KPQWVNYVNMWDTVNFAIYFRNSLL 78 ++ +P+LWM+ ++ ++D I ++SLP P+ N+V+ W+ + YF NS++ Sbjct: 45 LIAIAYPLLWMVMSAFKNSDDIFE--HSWSLPSSWHPE--NFVSAWNQ-GISSYFMNSVI 99 Query: 79 ICGATTLLAGAFAVLAGYALARFDFPGSKLFSMSIISTQLIPGIMFLFPIYLMFLWIKNT 138 + T ++ + A Y L+RF+F G F + + ++ + L P+Y I + Sbjct: 100 VTALTCVITVFISAWAAYGLSRFEFKGKGFFLVLCLGGLMLTPQVSLVPLYS----IIQS 155 Query: 139 FGLPMINTYWGMILVYTAFYTPISIWIMRGFFVSIPRDLEESAVIDGCSKFQAFYKIILP 198 GL NTYW +IL Y A+ P +I ++R +F+SI ++LEE+A +DGC+ F F++I LP Sbjct: 156 LGL--YNTYWALILPYAAYRIPFTIILIRSYFLSISKELEEAAYLDGCTSFGVFFRIFLP 213 Query: 199 LSVPGIIATGIFIFLTAWDELLFAWVLTTSSDVQTIPVGIRLFVGQYNTRYDLLMAASTV 258 +SVP ++ +GI W+E +FA + +++TIP G+ F T + +L+A T+ Sbjct: 214 MSVPILVTSGILTAYHTWNEFMFAIIFIDDENLRTIPAGLMQFRDALQTDWGVLLAGLTI 273 Query: 259 VTVPVMVIFFMTQKYFISGMTAGAVKG 285 P++++F + QKYF+ G+ +G+VKG Sbjct: 274 SAAPIIILFLLMQKYFVRGIASGSVKG 300 >BH1246 [G] COG0395 ABC-type sugar transport system, permease component Length = 273 Score = 162 bits (411), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 100/280 (35%), Positives = 160/280 (57%), Gaps = 9/280 (3%) Query: 5 RKRSVTSFLLTSLTWFIVVVTIFPILWMIFTSLHSNDQILNGITTFSLPKPQWVNYVNMW 64 +K+S SF + + V + +FP +W+ TS+ +I FS +P + +YVN Sbjct: 2 KKKSGASFYFFLIVF--VFLVMFPFIWVFLTSIKPPREIFASFAWFSA-EPTFQSYVNAV 58 Query: 65 DTVNFAIYFRNSLLICGATTLLAGAFAVLAGYALARFDFPGSKLFSMSIISTQLIPGIMF 124 + Y NS +I TTL+A A A LA YAL R G L ++++ + P I Sbjct: 59 NNRPLFTYMMNSFVISSLTTLIAIACASLAAYALTRLPIKGKGLILGTVLAASMFPQIAI 118 Query: 125 LFPIYLMFLWIKNTFGLPMINTYWGMILVYTAFYTPISIWIMRGFFVSIPRDLEESAVID 184 + PIY L + N+Y+G+++ Y P++IWI+ FF IP +LEESA +D Sbjct: 119 ITPIYSFIT------DLGLRNSYFGLVIPYITISLPLAIWILATFFKKIPFELEESAKLD 172 Query: 185 GCSKFQAFYKIILPLSVPGIIATGIFIFLTAWDELLFAWVLTTSSDVQTIPVGIRLFVGQ 244 G + FQ F KII PL+ PG+ T I +F+ AW+E LFA + T+ ++T+PVG+ L+ Q Sbjct: 173 GATPFQTFRKIIFPLAAPGVFTTAILVFIAAWNEYLFALTINTADRLRTVPVGLSLYESQ 232 Query: 245 YNTRYDLLMAASTVVTVPVMVIFFMTQKYFISGMTAGAVK 284 Y + + AA+ +VTVP+++I + Q+ ++G+T+G+VK Sbjct: 233 YTIPWGDITAATVIVTVPIVIIVLLFQRRIVAGLTSGSVK 272 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.332 0.143 0.455 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 19,619,581 Number of extensions: 743531 Number of successful extensions: 3967 Number of sequences better than 1.0e-05: 220 Number of HSP's gapped: 3706 Number of HSP's successfully gapped: 224 Length of query: 285 Length of database: 38,378,431 Length adjustment: 105 Effective length of query: 180 Effective length of database: 26,268,361 Effective search space: 4728304980 Effective search space used: 4728304980 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.9 bits) S2: 115 (48.9 bits)